View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_1D_low_41 (Length: 217)
Name: NF7577_1D_low_41
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_41 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 1410914 - 1411124
Alignment:
| Q |
7 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1410914 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
1411013 |
T |
|
| Q |
107 |
taactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1411014 |
taactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
1411113 |
T |
|
| Q |
207 |
agagcttctga |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
1411114 |
agagcttctga |
1411124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 1414366 - 1414500
Alignment:
| Q |
83 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaata |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
1414366 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
1414465 |
T |
|
| Q |
183 |
agcttctttggaaacatatcaggaagagcttctga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414466 |
agcttctttggaaacatatcaggaagagcttctga |
1414500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 1419917 - 1420046
Alignment:
| Q |
85 |
aatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataag |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||| | || |||| ||||||| || ||||| |
|
|
| T |
1419917 |
aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag |
1420016 |
T |
|
| Q |
185 |
cttctttggaaacatatcaggaagagcttctga |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
1420017 |
---ctttggaaacatatcagggagagcttctga |
1420046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 1408109 - 1408242
Alignment:
| Q |
84 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
183 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||| |||||||| ||||||||| | | | |||||| || ||||| |||| ||||||| || |||| |
|
|
| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
|
| Q |
184 |
gcttctttggaaacatatcaggaagagcttctga |
217 |
Q |
| |
|
||| |||||||| || |||||||||||||||| |
|
|
| T |
1408209 |
gctactttggaagcaccacaggaagagcttctga |
1408242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 1419863 - 1419912
Alignment:
| Q |
7 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt |
56 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||| |||||| |
|
|
| T |
1419863 |
tttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt |
1419912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 1414314 - 1414365
Alignment:
| Q |
7 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
58 |
Q |
| |
|
||||||||||||| || |||||| |||||| |||||||||||| |||||||| |
|
|
| T |
1414314 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
1414365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
84 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
183 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| | ||| |||| | |||||| || |||| |
|
|
| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
|
| Q |
184 |
gcttctttggaaacatatcaggaaga |
209 |
Q |
| |
|
|||||||||||| ||| ||||||||| |
|
|
| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
84 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
183 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| ||| |||| | | |||||| || |||| |
|
|
| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
|
| Q |
184 |
gcttctttggaaacatatcaggaaga |
209 |
Q |
| |
|
|||||||||||| ||| ||||||||| |
|
|
| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University