View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_42 (Length: 213)

Name: NF7577_1D_low_42
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_42
NF7577_1D_low_42
[»] chr6 (10 HSPs)
chr6 (7-160)||(31564964-31565117)
chr6 (7-183)||(33414568-33414744)
chr6 (76-183)||(33269541-33269648)
chr6 (7-183)||(33258194-33258372)
chr6 (56-172)||(33384040-33384156)
chr6 (7-183)||(33395052-33395230)
chr6 (37-133)||(33278972-33279068)
chr6 (7-130)||(33280358-33280481)
chr6 (126-170)||(33293034-33293078)
chr6 (7-67)||(33293090-33293150)
[»] chr2 (1 HSPs)
chr2 (7-183)||(17447805-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (7-183)||(2315-2493)
scaffold0428 (37-133)||(15185-15281)
scaffold0428 (7-130)||(13772-13895)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 31564964 - 31565117
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31564964 ctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacgga 31565063  T
Q  107 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 160  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565064 ctttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 33414744 - 33414568
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    |||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| |||||||||||    
T  33414744 ctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacgga 33414645  T
Q  107 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 183  Q
    |||| | || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33414644 ctttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 33269648 - 33269541
Alignment:
Q  76 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 175  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
Q  176 acaggttc 183  Q
    ||||||||    
T  33269548 acaggttc 33269541  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 33258372 - 33258194
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 105  Q
    |||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |    
T  33258372 ctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccg 33258273  T
Q  106 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 183  Q
    ||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  33258272 actttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  56 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 155  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  156 atgcaagttgctgcttg 172  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 33395230 - 33395052
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    |||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| ||    
T  33395230 ctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccga 33395131  T
Q  107 ctttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 183  Q
    |||| | ||   |||||||| | |||||||||||| |||  ||||||| ||||||||   |||||||||||||||||||    
T  33395130 ctttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttc 33395052  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  37 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 133  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 33280481 - 33280358
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    ||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || ||    
T  33280481 ctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactga 33280382  T
Q  107 ctttatcggtagaagtgagaaatt 130  Q
    |||| | || ||||||||||||||    
T  33280381 cttttttggcagaagtgagaaatt 33280358  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  126 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 170  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 33293150 - 33293090
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattc 67  Q
    |||| ||||||||| |||||| ||  |||||||||||||| | ||||||||||||||||||    
T  33293150 ctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgattc 33293090  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 17447805 - 17447981
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    |||| ||||||||||||||||  |  |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| ||    
T  17447805 ctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccga 17447904  T
Q  107 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 183  Q
    |||| | || ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||    
T  17447905 ctttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 17447981  T

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Target: scaffold0428 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 2493 - 2315
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 105  Q
    |||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |    
T  2493 ctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccg 2394  T
Q  106 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 183  Q
    ||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  2393 actttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  37 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 133  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 13772 - 13895
Alignment:
Q  7 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 106  Q
    ||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || ||    
T  13772 ctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactga 13871  T
Q  107 ctttatcggtagaagtgagaaatt 130  Q
    |||| | || ||||||||||||||    
T  13872 cttttttggcagaagtgagaaatt 13895  T

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