View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_43 (Length: 204)

Name: NF7577_1D_low_43
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_43
NF7577_1D_low_43
[»] chr2 (14 HSPs)
chr2 (26-202)||(31371840-31372016)
chr2 (30-202)||(31242585-31242757)
chr2 (63-202)||(31382343-31382482)
chr2 (63-202)||(31279094-31279233)
chr2 (63-202)||(31303069-31303208)
chr2 (63-202)||(31353815-31353954)
chr2 (63-202)||(31289254-31289393)
chr2 (68-202)||(31251567-31251701)
chr2 (68-202)||(31313759-31313893)
chr2 (81-202)||(31230174-31230295)
chr2 (81-202)||(31177432-31177553)
chr2 (81-202)||(31188758-31188879)
chr2 (81-202)||(31196710-31196831)
chr2 (81-202)||(31215322-31215443)
[»] chr5 (1 HSPs)
chr5 (80-196)||(36210560-36210676)
[»] chr8 (3 HSPs)
chr8 (80-202)||(21009607-21009729)
chr8 (80-202)||(21001638-21001760)
chr8 (108-199)||(20062018-20062109)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 31371840 - 31372016
Alignment:
Q  26 aaagtgctgagatagaaaatgtgaaatatcacaaaaatagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattca 125  Q
    ||||| || ||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||    
T  31371840 aaagtactaagatagaaaatgtgaaaaatcacaataatagaccatacaggaaaaattaccaaataaagcacgagctagactattgttttccaagtattca 31371939  T
Q  126 tatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  31371940 tatatcagcaacaattgatctccctccacacaacaaccgtggagtttaacaagataaggatgttgcaaagcagaaat 31372016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 31242585 - 31242757
Alignment:
Q  30 tgctgagatagaaaatgtgaaatatcacaaaaatagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatata 129  Q
    |||| |||||||||||| ||||||||||||||||||| ||||  | ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  31242585 tgctaagatagaaaatgcgaaatatcacaaaaatagaccatatcgtaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcatata 31242684  T
Q  130 tcagcaacaattgatctccctccacacaacaaccatagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  31242685 tcagcaacaattgatctccctccacacaacaaccgtggagtttaacaagataagggtgttgcaaagctgaaat 31242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 31382343 - 31382482
Alignment:
Q  63 tagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 162  Q
    |||| |||| ||||||  ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31382343 tagaccatataggaaaagttaccaaataaagcacgggaaagactattgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 31382442  T
Q  163 catagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31382443 catagagtttaacaagataagggtgttgcaaagcagaaat 31382482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 31279094 - 31279233
Alignment:
Q  63 tagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 162  Q
    |||| |||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  31279094 tagaccatataggaaaaattaccaaataaagcacgagcgagactattgttttccatgtattcatatatcagcaataactgatctccttccacacaacaac 31279193  T
Q  163 catagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  31279194 catagagtttaacaagataaggatgttgcaaagcagaaat 31279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 31303069 - 31303208
Alignment:
Q  63 tagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 162  Q
    |||| |||| |||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31303069 tagaacatataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaac 31303168  T
Q  163 catagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  31303169 cgtggagtttaacaagataaggatgttgcaaagcagaaat 31303208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 31353815 - 31353954
Alignment:
Q  63 tagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 162  Q
    ||||||||| |||||| |||||| |||||||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31353815 tagagcatataggaaaaattaccgaataaagcacgagcaagactattattctccaagtattcatatatcagcaacaattgatctccctccacacaacaac 31353914  T
Q  163 catagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  31353915 cataaagtttaacaagataagggtgttgcaacgcagaaat 31353954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 31289254 - 31289393
Alignment:
Q  63 tagagcatacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaac 162  Q
    |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||| ||| ||||||||||||||||||||||    
T  31289254 tagaccatataggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagcatcaactgatctccctccacacaacaac 31289353  T
Q  163 catagagtttaacaagataagggtgttgcaaagcagaaat 202  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  31289354 cgtggagtttaacaagataaggatgttgcaaagcagaaat 31289393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 31251567 - 31251701
Alignment:
Q  68 catacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatag 167  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||| ||| ||||| ||||||||||||||||||||||| | |    
T  31251567 cataaaggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagaaacaactgatctccctccacacaacaaccgtgg 31251666  T
Q  168 agtttaacaagataagggtgttgcaaagcagaaat 202  Q
    ||| |||||||||||||||||||||||||||||||    
T  31251667 agtctaacaagataagggtgttgcaaagcagaaat 31251701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 31313759 - 31313893
Alignment:
Q  68 catacaggaaatattaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatag 167  Q
    |||| |||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |    
T  31313759 catataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtgg 31313858  T
Q  168 agtttaacaagataagggtgttgcaaagcagaaat 202  Q
    ||| ||||||||||||| | |||||||||| ||||    
T  31313859 agtctaacaagataaggatattgcaaagcataaat 31313893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31230174 - 31230295
Alignment:
Q  81 ttaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagat 180  Q
    |||||||| ||||||| |||||| || || ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||| |||     
T  31230174 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatatcagcagcaactgatctccctccatacaacaaccatagagcttaactagac 31230273  T
Q  181 aagggtgttgcaaagcagaaat 202  Q
    |||| |||||||||||||||||    
T  31230274 aaggatgttgcaaagcagaaat 31230295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31177432 - 31177553
Alignment:
Q  81 ttaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagat 180  Q
    |||||||| ||||||| |||||| || || |||||||||||||||||||| ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||     
T  31177432 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccgtagagcttaactagac 31177531  T
Q  181 aagggtgttgcaaagcagaaat 202  Q
    ||||||||||||||||||||||    
T  31177532 aagggtgttgcaaagcagaaat 31177553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31188758 - 31188879
Alignment:
Q  81 ttaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagat 180  Q
    |||||||| ||||||| |||||| || || |||||||||||||||||||| || || || ||||||||||||| ||| ||||||||||| ||||| |||     
T  31188758 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagtaataactgatctccctccatacagcaaccatagagcttaactagac 31188857  T
Q  181 aagggtgttgcaaagcagaaat 202  Q
    ||||||||||||||||||||||    
T  31188858 aagggtgttgcaaagcagaaat 31188879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31196710 - 31196831
Alignment:
Q  81 ttaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagat 180  Q
    |||||||| ||||||| | |||| || || |||||||||||||||||||| ||||| || ||||||||||||| ||| ||||||||||| ||||| |||     
T  31196710 ttaccaaacaaagcacaatcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagac 31196809  T
Q  181 aagggtgttgcaaagcagaaat 202  Q
    ||||||||||||||||||||||    
T  31196810 aagggtgttgcaaagcagaaat 31196831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31215322 - 31215443
Alignment:
Q  81 ttaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagat 180  Q
    |||||||| ||||||| | |||| || || |||||||||||||||||||| ||||| || ||||||||||||| ||| ||||||||||| ||||| |||     
T  31215322 ttaccaaacaaagcacaatcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagac 31215421  T
Q  181 aagggtgttgcaaagcagaaat 202  Q
    ||||||||||||||||||||||    
T  31215422 aagggtgttgcaaagcagaaat 31215443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 36210560 - 36210676
Alignment:
Q  80 attaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaaga 179  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||  || ||||||||||||||||| || ||||||||||||||||||    
T  36210560 attaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaaga 36210659  T
Q  180 taagggtgttgcaaagc 196  Q
    | |||||||||||||||    
T  36210660 tgagggtgttgcaaagc 36210676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 21009607 - 21009729
Alignment:
Q  80 attaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaaga 179  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||||| |||||  | |||| |||  | |||||||| |||||||||    
T  21009607 attaccaaatagagcatgagcaagactattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaaga 21009706  T
Q  180 taagggtgttgcaaagcagaaat 202  Q
    |  |||||||| |||| ||||||    
T  21009707 ttggggtgttgtaaagtagaaat 21009729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 21001760 - 21001638
Alignment:
Q  80 attaccaaataaagcacgagcaagactgttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaaga 179  Q
    ||||||||||| |||| ||||||| || ||||||||||||||||||||||||| |||||| |||||  | |||| |||  | |||||||| |||||||||    
T  21001760 attaccaaatagagcatgagcaaggctattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaaga 21001661  T
Q  180 taagggtgttgcaaagcagaaat 202  Q
    |  |||||||| |||| ||||||    
T  21001660 ttggggtgttgtaaagtagaaat 21001638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 20062109 - 20062018
Alignment:
Q  108 ttgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagagtttaacaagataagggtgttgcaaagcaga 199  Q
    ||||| |||||||||||||||||||||| ||| || | ||| || |  ||||| |||||||| ||||||||||  || || |||||||||||    
T  20062109 ttgttctccatgtattcatatatcagcagcaactgctttccttcaatgcaacagccatagagcttaacaagatttggatgctgcaaagcaga 20062018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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