View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_5 (Length: 406)

Name: NF7577_1D_low_5
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_5
NF7577_1D_low_5
[»] chr6 (6 HSPs)
chr6 (147-361)||(10196055-10196276)
chr6 (1-59)||(10195183-10195241)
chr6 (1-59)||(30890191-30890249)
chr6 (66-125)||(10195675-10195734)
chr6 (68-126)||(1608089-1608147)
chr6 (68-126)||(4857022-4857080)
[»] chr5 (1 HSPs)
chr5 (68-126)||(9663123-9663181)
[»] chr2 (2 HSPs)
chr2 (68-126)||(36722005-36722063)
chr2 (68-125)||(20103351-20103408)
[»] chr8 (1 HSPs)
chr8 (98-126)||(16251652-16251680)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 147 - 361
Target Start/End: Original strand, 10196055 - 10196276
Alignment:
Q  147 agcaaaactgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttgaatcagttgacagaatc-atgt----- 240  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |         
T  10196055 agcaaaattgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttcagtcagttgacagaatcaatatataac 10196154  T
Q  241 -aaaagaaaaaatcaagtctaacacccttcttnnnnnnnnnnnngcaaacatctacgatgtttacgttcctaatgtattctctacaatttttatacaaat 339  Q
     || | |||||||||||||||||||| |||||            | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10196155 aaacaaaaaaaatcaagtctaacaccgttcttaaaaataaaaaagtaaacatctatgatgtttacgttcctaatgcattctctacaatttttatacaaat 10196254  T
Q  340 aaatgaataatacaatccctac 361  Q
    ||||||||||||||||||||||    
T  10196255 aaatgaataatacaatccctac 10196276  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10195183 - 10195241
Alignment:
Q  1 aaatgaaacaatcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10195183 aaatgaaacaatcacactaaaaattgggtcaattgtcattacattgattgctcactaaa 10195241  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30890191 - 30890249
Alignment:
Q  1 aaatgaaacaatcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa 59  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  30890191 aaatgaaacaatcacaccaaaaattgtgtcaattgtcattacattgattgcttactaaa 30890249  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 10195675 - 10195734
Alignment:
Q  66 acaaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata 125  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||    
T  10195675 acaaaacattaaatgctcctatgaacaaaaggttgccatgtgtactattaaaataaaata 10195734  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 1608089 - 1608147
Alignment:
Q  68 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 126  Q
    |||||||||||||| ||| | || | ||| ||| |||||||||||||||||||||||||    
T  1608089 aaaacattaaatgcaccttttaatataaggttgccacgtgtactatcaaaataaaatag 1608147  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 4857022 - 4857080
Alignment:
Q  68 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 126  Q
    |||||||||||||| ||| | || | ||| ||| |||||||||||||||||||||||||    
T  4857022 aaaacattaaatgcacctttcaatataaggttgccacgtgtactatcaaaataaaatag 4857080  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 9663123 - 9663181
Alignment:
Q  68 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 126  Q
    |||||||||||||| ||| | || | ||| |||||||||||||||||||||||||||||    
T  9663123 aaaacattaaatgcaccttttaatataaggttgtcacgtgtactatcaaaataaaatag 9663181  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 36722063 - 36722005
Alignment:
Q  68 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 126  Q
    |||||||||||||| ||| | || | ||| |||||||||||||||||||||||||||||    
T  36722063 aaaacattaaatgcacctttcaatataaggttgtcacgtgtactatcaaaataaaatag 36722005  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 20103408 - 20103351
Alignment:
Q  68 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata 125  Q
    |||||||||||||| ||| | || | ||| || |||||||||||||||||||||||||    
T  20103408 aaaacattaaatgcacctttcaatataagcttctcacgtgtactatcaaaataaaata 20103351  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 16251680 - 16251652
Alignment:
Q  98 ttgtcacgtgtactatcaaaataaaatag 126  Q
    |||||||||||||||||||||||||||||    
T  16251680 ttgtcacgtgtactatcaaaataaaatag 16251652  T

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