View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_6 (Length: 402)
Name: NF7577_1D_low_6
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 32164486 - 32164877
Alignment:
| Q |
11 |
gagatggacatcaacaatactacacatgtcaatgtggcagtttgatcatatctacttttttcatgatcgtgtgtgatcataaagaaaaattaccttctta |
110 |
Q |
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| T |
32164486 |
gagatggacgtcaacaatactacacatgtcaatgtggcagtttgatcatatctactttgctcatgatcgtgtgtgatcataaagaaaaattaccttctta |
32164585 |
T |
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| Q |
111 |
acaagcagctggactggttttataatcaccctaccgcagatgtgcatgttctgaaattgagtcttgtaaagctggagataaccgttcaggcataagaatc |
210 |
Q |
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| T |
32164586 |
acaagcagctggactggttttataatcaccctaccggagatgtgcatgttctgaaaatgagtcttgtaaagctggagataaccgttcaggcataagattc |
32164685 |
T |
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| Q |
211 |
gaagagcttggcaggagctgatgggtccgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtggtagaagcaagattgtctagct |
310 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32164686 |
gaagagcttggcagaagctgatgggttcgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtagtagaagcaagattgtctagct |
32164785 |
T |
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| Q |
311 |
cgagagtcaataataactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatga |
402 |
Q |
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| T |
32164786 |
cgagagtcaataataactcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatga |
32164877 |
T |
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