View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_high_20 (Length: 283)
Name: NF7577_2D_high_20
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 52713337 - 52713610
Alignment:
| Q |
1 |
gtcggcacattcatgactgttggatcaaggctgatcaataannnnnnnnaggaatgctacataacgagctcactagttatcatatgatgtatcgaggcac |
100 |
Q |
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| T |
52713337 |
gtcggcacattcatgactgttggatcaaggctgatcaatatttttttttaggaatgctacataacgagctcaccagttatcatatgatgtatcgaggcac |
52713436 |
T |
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| Q |
101 |
attcattaccgttggtatgaggcagaataatccagattgcaatgtagaatttgattttaaatnnnnnnntatcgaactagaaatttaaatcgtcgatctt |
200 |
Q |
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| T |
52713437 |
attcattaccgttggtatgaggcagaataatccagatttcaatgtagaatttgattttaaataaaaaaatatcgaactagaaatttaaatcgtcgatctt |
52713536 |
T |
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| Q |
201 |
gatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcatat |
274 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713537 |
gattaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcatat |
52713610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 52722224 - 52722297
Alignment:
| Q |
201 |
gatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcatat |
274 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| |
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| T |
52722224 |
gatcaaatgaccttaaatgtactgatcgtatgaatgtgtgaaattgttgtgcttagatggtctaattttcatat |
52722297 |
T |
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