View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_13 (Length: 719)
Name: NF7577_2D_low_13
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 12812739 - 12812611
Alignment:
| Q |
244 |
accaccatagcctcctccagctccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812739 |
accaccatagcctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct |
12812640 |
T |
|
| Q |
344 |
tcaccgcctccatagccagaatcaccatg |
372 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
12812639 |
tcaccacctccatagccagaatcaccatg |
12812611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 12749647 - 12749519
Alignment:
| Q |
244 |
accaccatagcctcctccagctccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct |
343 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | | ||||||||||| |
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| T |
12749647 |
accaccataacctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcttttttttttttttccccacctcct |
12749548 |
T |
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| Q |
344 |
tcaccgcctccatagccagaatcaccatg |
372 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12749547 |
tcaccgcctccatagccagaatcaccatg |
12749519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 12749716 - 12749588
Alignment:
| Q |
244 |
accaccatagcctcctccagctccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct |
343 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||| |||||||| | |||||||||||||| ||||||||| |
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| T |
12749716 |
accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctaccccaccaccataacctcctccagctccacctcct |
12749617 |
T |
|
| Q |
344 |
tcaccgcctccatagccagaatcaccatg |
372 |
Q |
| |
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| || ||||| |||||||| || ||||| |
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| T |
12749616 |
ttgccacctccgtagccagactcgccatg |
12749588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 12812808 - 12812680
Alignment:
| Q |
244 |
accaccatagcctcctccagctccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct |
343 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| | || ||||||||||| ||||||||| |
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| T |
12812808 |
accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct |
12812709 |
T |
|
| Q |
344 |
tcaccgcctccatagccagaatcaccatg |
372 |
Q |
| |
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| || ||||| |||||||| || ||||| |
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| T |
12812708 |
ttgccacctccgtagccagactcgccatg |
12812680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 12812660 - 12812572
Alignment:
| Q |
254 |
cctcctccagctccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcc |
342 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||| |||| |
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| T |
12812660 |
cctcctccagccccacctccttcaccacctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc |
12812572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 12749730 - 12749657
Alignment:
| Q |
299 |
ccatgctctcccccaccagcgtaacctcctccagccccacctccttcaccgcctccatagccagaatcaccatg |
372 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |
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| T |
12749730 |
ccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
12749657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 12812822 - 12812749
Alignment:
| Q |
299 |
ccatgctctcccccaccagcgtaacctcctccagccccacctccttcaccgcctccatagccagaatcaccatg |
372 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |
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| T |
12812822 |
ccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
12812749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 12749556 - 12749480
Alignment:
| Q |
266 |
ccacctcctttgccacctccatagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcc |
342 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||||||||||||| | |||||||||||||| ||| |||| |
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| T |
12749556 |
ccacctccttcaccgcctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc |
12749480 |
T |
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