View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_15 (Length: 618)
Name: NF7577_2D_low_15
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 163 - 533
Target Start/End: Original strand, 35523873 - 35524247
Alignment:
| Q |
163 |
ttttacaataattgtgtaaatataatcaattataacttttacaacattgaatttaaacacaaccacaaaagtaatgttataataaacttgacttaaaata |
262 |
Q |
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| T |
35523873 |
ttttacaataattgtgtaaatataatcaattataatttctaaaaaattgaatttaaacacatccataaaagt--tgttacaataaacctgacctaaaata |
35523970 |
T |
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| Q |
263 |
ttcattcttgatacatgagt----acctaataataaagaaagtgtctaacattatttgataccaagt------ctagcaaaatacatgttttaaaat--- |
349 |
Q |
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| T |
35523971 |
ttcattcttgatacatgagttaacacataataataaagaaaatgtctaacattatttgataccaagtacaagcttagcaaaatatatgtcttaaaattca |
35524070 |
T |
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| Q |
350 |
aaaacatcatctatattgtcctcttgaaattcatcatctacaccgtctttttcatcatcttcattgataccttgaagcagaaaagagtaaaacaaagtta |
449 |
Q |
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| T |
35524071 |
tcatcatcatctatgttgtccttttgaaattcatcatttacgccgtctttttcatcatcttcattgataccttgaagcaaaaaagagtaaaacaaaatta |
35524170 |
T |
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| Q |
450 |
catcaaccagaaatagtatcaattcaacggacaattagaaaacgattaagagttatacaaaagacaaataaaaaccaagacaat |
533 |
Q |
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| T |
35524171 |
catcaacca-------tatcaattcaatggacaattagaaagtcattaggagttatacataacacaaataaaaaccaagacaat |
35524247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 353 - 529
Target Start/End: Original strand, 3848626 - 3848801
Alignment:
| Q |
353 |
acatcatctatattgtcctcttgaaattcatcatctacaccgtctttttcatcatcttcattgataccttgaagcagaaaagagtaaaacaaagttacat |
452 |
Q |
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| T |
3848626 |
acatcatctatgttgtcctcttgaaattcatcatctacgccgtctttttcatcatcttcattgataccttaaagcaaaaaagagtaaaacaaaattacat |
3848725 |
T |
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| Q |
453 |
caaccagaaatagtatcaattcaacggacaattagaaaacgattaagagttatacaaaagacaaataaaaaccaaga |
529 |
Q |
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| T |
3848726 |
caaccagaaatagtatc-attcaacggacaattaaaaaaccattaagagttatacaaaagacaaataaaaaccaaga |
3848801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 520 - 607
Target Start/End: Original strand, 3848948 - 3849034
Alignment:
| Q |
520 |
aaaaccaagacaattattaaaacacatccaaagtattattgtaaacaataaaatctctttaacgagagtaatttcctacaacaccaaa |
607 |
Q |
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| T |
3848948 |
aaaaccaaga-aattattaaaacacacctaaagtattattgtaaacaagaaaatctctttaacaagagtaatttcctacaacatcaaa |
3849034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 3847585 - 3847645
Alignment:
| Q |
227 |
acaaaagtaatgttataataaacttgacttaaaatattcattcttgatacatgagtaccta |
287 |
Q |
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| T |
3847585 |
acaaaagtaatgttataataaacttgagttaaaatattcattcttgatacatgagtaccta |
3847645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 3847853 - 3847885
Alignment:
| Q |
330 |
caaaatacatgttttaaaataaaacatcatcta |
362 |
Q |
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| T |
3847853 |
caaaatacatgttttaaaattaaacatcatcta |
3847885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 11693737 - 11693668
Alignment:
| Q |
354 |
catcatctatattgtcctcttgaaattcatcatctacaccgtctttttcatcatcttcattgataccttg |
423 |
Q |
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| T |
11693737 |
catcacctatgttgtccttttgaaattcatcatctacattgtcttttacatcatctttaatgataccttg |
11693668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 11693990 - 11693921
Alignment:
| Q |
354 |
catcatctatattgtcctcttgaaattcatcatctacaccgtctttttcatcatcttcattgataccttg |
423 |
Q |
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| T |
11693990 |
catcacctatgttgtcctcttgaagttcatcatctatattgtcctttaaatcatcttcaatgataccttg |
11693921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 1256358 - 1256407
Alignment:
| Q |
374 |
tgaaattcatcatctacaccgtctttttcatcatcttcattgataccttg |
423 |
Q |
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| T |
1256358 |
tgaaattcatcatctacatcgtcattttcatcatcttcattcataccttg |
1256407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 5226327 - 5226276
Alignment:
| Q |
368 |
tcctcttgaaattcatcatctacaccg-tctttttcatcatcttcattgata |
418 |
Q |
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| T |
5226327 |
tcctcttgaaattcatcatctacatcgatttttttcatcatcttcattgata |
5226276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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