View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_20 (Length: 548)
Name: NF7577_2D_low_20
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 45584104 - 45584409
Alignment:
| Q |
1 |
gaaaccaaaaatcttgtttcttttttcctttgcaacatttaaagcaaccatttgtctagatatagcttttttatcaactactctgcactgagagtctcaa |
100 |
Q |
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| T |
45584104 |
gaaaccaaaaatcttgtttcttttttcctttgcaacatttaaagcaaccatttgtctagatatagcttttttatcaactactctgcactgagagtctcaa |
45584203 |
T |
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| Q |
101 |
aatttgtcatatatgtaaataaataaaggtttggaataaggaatgtgaaagatatatacacacgtatgtacgggaactaatccttctctaaagttcaagc |
200 |
Q |
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| T |
45584204 |
aatttgtcatatatgtaaataaataaagggttggaataaggaatgtgaaagatatatatacacgtaagtacgggaactaatccttctctaaagttcaagc |
45584303 |
T |
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| Q |
201 |
caaaatgtgcataatgatatgtcaaattcttggcaactcaattaagtaactagtatttggattacctgcatttgaatttttaatttttcatacctttgtg |
300 |
Q |
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| T |
45584304 |
caaaatgtgcataatgatatgtcaaattcttggcaactcaattaagtaactagtatttggattacctgcatttgaatttttaatttttcatacctttgtg |
45584403 |
T |
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| Q |
301 |
cataat |
306 |
Q |
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|||||| |
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| T |
45584404 |
cataat |
45584409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 45584434 - 45584517
Alignment:
| Q |
303 |
taattaatattctgcagttcaatgatatgagttgagatgccgaatattaagaaggagatctaaggatcccatgtcgcttgcaaa |
386 |
Q |
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| T |
45584434 |
taattaatattctgcagttcaatgatatgagttgagatgccgaatgttaagaaggagatctaagaatcccatgtcgcttgcaaa |
45584517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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