View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_22 (Length: 439)
Name: NF7577_2D_low_22
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_22 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 11901334 - 11900896
Alignment:
| Q |
1 |
gcctctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaact |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11901334 |
gcctctatatcctggtcttgatgatgagcttgttcttgtggagtcgaacgtaagatcaatgagggatacaatgcatcatgctgatggtagtgaaactact |
11901235 |
T |
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| Q |
101 |
actaagtcaaaacccttttccaaattgaaatcaatggcaaatgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcacttcagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||| |||| ||| ||| |
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| T |
11901234 |
actaagtcaaaacccttttccaaattgaaatcaatggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgagg |
11901135 |
T |
|
| Q |
201 |
aacttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaagaact |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11901134 |
aacttcacattagagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttcactcatatcactcactattgagagatgtgaagaact |
11901035 |
T |
|
| Q |
301 |
tgatcttgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaatt |
400 |
Q |
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| T |
11901034 |
tgatctcgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattcccaaactcaagtcccttccaagggaaatt |
11900935 |
T |
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| Q |
401 |
gaaaacttgaactctttgcatgatttaaggctttatgat |
439 |
Q |
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| T |
11900934 |
gaaaacttgaactctttgcatgatttaaggctttatgat |
11900896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 390
Target Start/End: Original strand, 12039971 - 12040368
Alignment:
| Q |
5 |
ctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaacta--- |
101 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||| ||| |||| ||| |
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| T |
12039971 |
ctatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcattatgctgacagtaccgaaagcactgaaa |
12040070 |
T |
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| Q |
102 |
---ctaagtcaaaa------cccttttccaaattgaaatcaatggcaaatgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttc |
192 |
Q |
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| T |
12040071 |
attctaattcacaatcacaacccttctccaaattgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttc |
12040170 |
T |
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| Q |
193 |
acttcaggaacttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgt |
292 |
Q |
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|||| |||||||||||||| ||||||| | ||| |||||| |||| |||||||| ||||||||| |||||| | ||||||||||||| |||||| |
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| T |
12040171 |
acttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaacactcactattgaaagatgt |
12040270 |
T |
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| Q |
293 |
gaagaacttgatcttgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttcc |
390 |
Q |
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| T |
12040271 |
caacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtcccttcc |
12040368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 110 - 439
Target Start/End: Original strand, 11861293 - 11861622
Alignment:
| Q |
110 |
aaacccttttccaaattgaaatcaatggcaaatgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcacttcaggaacttcaca |
209 |
Q |
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| T |
11861293 |
aaacccttctccaaattgaagtccatggtagttgagcgcatcgaccattctccaccagaaagatggctcaaaaacttcatttcacttgaggaacttcaca |
11861392 |
T |
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| Q |
210 |
ttaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaagaacttgatcttga |
309 |
Q |
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| T |
11861393 |
ttagagattgttttaatttagcgtctctaccacaaggtttcaagtctttgagttcactccaaacactcactattgaaagatgtcaagaacttgatcttga |
11861492 |
T |
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| Q |
310 |
catctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttg |
409 |
Q |
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| T |
11861493 |
caaacatccaaatgagtgggagggtctgaaaaaccttcgttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttgaaaatgtg |
11861592 |
T |
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| Q |
410 |
aactctttgcatgatttaaggctttatgat |
439 |
Q |
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| T |
11861593 |
aacactttgaaagacttaaggatttatgat |
11861622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 11829053 - 11829369
Alignment:
| Q |
8 |
tatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaacta------ |
101 |
Q |
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||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||| ||| ||||| ||| |
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| T |
11829053 |
tatcccggtcttgatgatgagctcgttctggtggagtcgaacgtaagatcaatgagggatacaatgcattatgctgacagtactgaaagcactgaaacat |
11829152 |
T |
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| Q |
102 |
cta------agtcaaaacccttttccaaattgaaatcaatggcaaatgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcact |
195 |
Q |
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||| | ||| ||||||| || |||||||| || |||| || |||||| ||||| ||| | ||||| ||||| ||||||||||||||||||||||| |
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| T |
11829153 |
ctagttcacaatcacaacccttctcgaaattgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcact |
11829252 |
T |
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| Q |
196 |
tcaggaacttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaa |
295 |
Q |
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| T |
11829253 |
tgaggaacttcacattagagattgttttattttggagtctctaccacaaggtttcaagtttttaagctcactcatatcactttctattgaaagatgtgaa |
11829352 |
T |
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| Q |
296 |
gaacttgatcttgacat |
312 |
Q |
| |
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|||||| ||| ||||| |
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| T |
11829353 |
caacttgttctggacat |
11829369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 11829404 - 11829495
Alignment:
| Q |
320 |
actgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaa |
411 |
Q |
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| T |
11829404 |
actgaatgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaacgtgaa |
11829495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 11861182 - 11861250
Alignment:
| Q |
5 |
ctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatg |
73 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||| | |||| ||| |||| |||||||||| |
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| T |
11861182 |
ctatatcccggtcttgatgatgagctcgttgtggtggagtcgagcgtaatatcaatgaaggatacaatg |
11861250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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