View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_2D_low_23 (Length: 423)
Name: NF7577_2D_low_23
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Original strand, 6836212 - 6836596
Alignment:
| Q |
16 |
ggtgttgaatatatgtaagatatgtatgtttaaatgttatccttgtaaggactggtatttattttttaataagctagcaaatgttagtgattatagtttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6836212 |
ggtgttgaatatatgtaagatatgtatgtttaaatgttatccttgtaaggactggtatttattttttaataagctagcaaatgttagtgattatagtttg |
6836311 |
T |
|
| Q |
116 |
tttgctagggtgaaggaaaaatatttgcggcagagaatatatttagcccaaattaaccacttcatttggcatgtatttgtgtggaagattgtcatttata |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6836312 |
tttgctagggtgaaggaaagatatttgcggcagagaatatatttagcccaaattaaccacttcatttggcatgtatttgtgtggaagattgtcatttata |
6836411 |
T |
|
| Q |
216 |
tgtaatataaacgtgtttatgtttttgtttgctctgtactcttttttctttgccggattcttctagcaatgtttttaatgatcgtagatgttaagttcct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6836412 |
tgtaatataaacgtgtttatgtttttgtttgctctgtactcttttttctttgccggattcttctagcaatgtttttaatga-ggtagatgttaagttcct |
6836510 |
T |
|
| Q |
316 |
ttaattattttagtttgagtattggtctagtccacccaaatatttttgtatctttctttttattacttattttataatcctactaa |
401 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6836511 |
ttaattattttagtttgagtataggtctagtccacccaaatatttttgtatctttctttttattacttattttataatcctactaa |
6836596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 6633223 - 6633431
Alignment:
| Q |
166 |
aattaaccacttcatttggcatgtatttgtgtggaagattgtcatttatatgtaatataaacgtgtttatgtttttgtttgctctgtactcttttttctt |
265 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6633223 |
aattaaccacttcatttgctatgtatttgtgtggaa-attgtattttttgtgtaatataaatgtgtttatgtttttgtttgctctgtactcttttttcct |
6633321 |
T |
|
| Q |
266 |
tgccggattcttctagcaatgtttttaatgatcgtagatgttaagttcctttaattattttagtttgagtattggtctagtccacccaaatatttttgta |
365 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| | |||||||||||| | ||||||||||||||||| ||||||||||| ||| ||||||||| |||||| |
|
|
| T |
6633322 |
tgctggattcttctagcaaggtttttaatga-ggcagatgttaagtttccttaattattttagtttgggtattggtctaatcc-cccaaatatctttgta |
6633419 |
T |
|
| Q |
366 |
tctttctttttat |
378 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
6633420 |
t-tttctttttat |
6633431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 375
Target Start/End: Original strand, 6808420 - 6808626
Alignment:
| Q |
169 |
taaccacttcatttggcatgtatttgtgtggaagattgtc---atttatatgtaatataaacgtgtttatgtttttgtttgctctgtactcttttttctt |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||| || | |
|
|
| T |
6808420 |
taaccacttcatttggcatgtacttgtgtgtaag-ttgtctttatttatatgtaatataaatgtggttatgtttttgtttgatctgtactctttctttct |
6808518 |
T |
|
| Q |
266 |
tgccggattcttctagcaatgtttttaatgatcgtagatgttaagttcctttaattattttagtttgagtattggtctagtccacccaaatatttttgta |
365 |
Q |
| |
|
||| |||| || || ||| ||||||| || | | ||| ||||| | ||||||||| ||||||| ||||||| |||||| |||||||| |||||| |
|
|
| T |
6808519 |
tgctcgattttttta-caaggtttttagcga-ggcatatgcaaagtttccttaattattctagtttggatattggtttagtcctcccaaatacctttgta |
6808616 |
T |
|
| Q |
366 |
tctttctttt |
375 |
Q |
| |
|
|||||||||| |
|
|
| T |
6808617 |
tctttctttt |
6808626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 6633056 - 6633158
Alignment:
| Q |
18 |
tgttgaatatatgtaagatatgtat--gtttaaatgttatccttgtaaggactggta-----tttatttttt--aataagctagcaaatgttagtgatta |
108 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
6633056 |
tgttgagtatatgtaagatatgtatatgtttaaattttatccttgtaaggactggtatattttttatttttttcaata----agcaaatgttagtgatta |
6633151 |
T |
|
| Q |
109 |
tagtttg |
115 |
Q |
| |
|
||||||| |
|
|
| T |
6633152 |
tagtttg |
6633158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 6636597 - 6636663
Alignment:
| Q |
162 |
cccaaattaaccacttcatttggcatgtatttgtgtggaagattgtc----atttatatgtaatataa |
225 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6636597 |
cccaagttaaccacttcatttggcatgtatttgtgtggaag-ttgtcttttatttatatgtaatataa |
6636663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 6636747 - 6636808
Alignment:
| Q |
317 |
taattattttagtttgagtattggtctagtccacccaaatatttttgtatctttctttttat |
378 |
Q |
| |
|
|||||||| | ||||| ||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
6636747 |
taattattatggtttgggtattggtctagttttcccaaatatctttgtacctttctttttat |
6636808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University