View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_2D_low_28 (Length: 345)

Name: NF7577_2D_low_28
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_2D_low_28
NF7577_2D_low_28
[»] chr6 (2 HSPs)
chr6 (1-318)||(13328785-13329094)
chr6 (5-59)||(1217504-1217557)
[»] chr1 (3 HSPs)
chr1 (1-111)||(25713132-25713242)
chr1 (1-78)||(52964427-52964503)
chr1 (1-81)||(52961322-52961401)
[»] chr2 (3 HSPs)
chr2 (1-117)||(30701252-30701368)
chr2 (1-55)||(30701394-30701448)
chr2 (1-66)||(30701463-30701528)
[»] chr8 (2 HSPs)
chr8 (1-78)||(37001082-37001158)
chr8 (1-58)||(36997002-36997056)
[»] chr7 (1 HSPs)
chr7 (8-81)||(37625161-37625233)
[»] chr4 (3 HSPs)
chr4 (8-80)||(33831165-33831235)
chr4 (8-80)||(33835100-33835170)
chr4 (8-80)||(37920552-37920622)
[»] chr5 (1 HSPs)
chr5 (8-80)||(8081382-8081452)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13329094 - 13328785
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  13329094 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacgtcattgtaatgaatgagttattcaattta 13328995  T
Q  101 aattattcaagttggtaccagtgcaggttctggatccaggtttttagggttggccgtcgtcaaggctaaccctagaagtttatgcttgtttgttgtctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328994 aattattcaagttggtaccagtgcaggttctggatccaggtttttagggttggccgtcgtcaaggctaaccctagaagtttatgcttgtttgttgtctac 13328895  T
Q  201 tttgaaatagtgactgcaccgccgtcgccggcgaagtttcatgtgggtctattttaaacacgcgccctaccataagcaccaaaggtcgtcgacctatcaa 300  Q
    ||||||||||| | |        |||||||||||||||||||  | || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13328894 tttgaaatagttatt--------gtcgccggcgaagtttcatcagagtttatattaaacacgcgccctaccataagcaccaaaggtcgtcgacctatcaa 13328803  T
Q  301 cacctaaaacgccactgc 318  Q
    ||||||||||||||||||    
T  13328802 cacctaaaacgccactgc 13328785  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 1217557 - 1217504
Alignment:
Q  5 tgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatata 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1217557 tgcttgatttagtttccttatttatgttttcttgagagattctct-gtgtatata 1217504  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25713132 - 25713242
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaattta 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    || ||||||||| ||    
T  25713132 attatgcttgacttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacatcattgtaatattagagttattcaatcta 25713231  T
Q  101 aattattcaag 111  Q
    |||||||||||    
T  25713232 aattattcaag 25713242  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52964427 - 52964503
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgt 78  Q
    |||||| |||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||  ||  |||||||||||    
T  52964427 attatggttgatttagttttcttattt-tgctttattgagagattctctcttgtatataagcttgtatacatcattgt 52964503  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52961322 - 52961401
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaat 81  Q
    |||||| |||||||||||| ||||||| || ||| |||||||||| |||| |||| |||||| ||  ||||||||||||||    
T  52961322 attatggttgatttagtttgcttattt-tgctttattgagagattttctcttgtacataagtttgtatacatcattgtaat 52961401  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 30701368 - 30701252
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaattta 100  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |||| ||||  |||| ||||||||  |  | ||||||||| ||    
T  30701368 attatgcttgatttagttttcttatttatgctttcttgagagattctcttgtgtatgtaagagtgcacacattattgtaatatacaagttattcaatcta 30701269  T
Q  101 aattattcaagttggta 117  Q
    |||||||||||||||||    
T  30701268 aattattcaagttggta 30701252  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30701448 - 30701394
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgta 55  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  30701448 attatgcttgatttagtttccttatttatgctttcttgagagattatcttgtgta 30701394  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30701528 - 30701463
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgc 66  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||| ||||    
T  30701528 attatgcttgatttagtttctttatttatgctttcttgagagattatcttgtgtatgtaagagtgc 30701463  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37001082 - 37001158
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgt 78  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||  ||| |||||||||||    
T  37001082 attatggttgatttagtttccttattt-tgttttcatgagagattctctcttgtatataagcttgcatacatcattgt 37001158  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36997002 - 36997056
Alignment:
Q  1 attatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatat 58  Q
    |||||| |||||||||||||||||||| ||||||| |  |||||||||||||||||||    
T  36997002 attatggttgatttagtttccttattt-tgttttcat--gagattctctcgtgtatat 36997056  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 37625161 - 37625233
Alignment:
Q  8 ttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaat 81  Q
    ||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| ||  | ||||||||||||    
T  37625161 ttgatttagtttcattattt-tgttttattgagatattctctcgtgtatataagtttgtatgcatcattgtaat 37625233  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 33831165 - 33831235
Alignment:
Q  8 ttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 80  Q
    |||||||||||||||| |||  | |||||||||| |||||||| ||||||||||  ||| |||||||||||||    
T  33831165 ttgatttagtttcctttttt--gctttcttgagatattctctcttgtatataagcttgcatacatcattgtaa 33831235  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 33835100 - 33835170
Alignment:
Q  8 ttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 80  Q
    |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  33835100 ttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 33835170  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 37920622 - 37920552
Alignment:
Q  8 ttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 80  Q
    |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  37920622 ttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 37920552  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 8081452 - 8081382
Alignment:
Q  8 ttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 80  Q
    |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  8081452 ttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 8081382  T

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