View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_30 (Length: 342)
Name: NF7577_2D_low_30
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_30 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 41689587 - 41689262
Alignment:
| Q |
17 |
aataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagac |
116 |
Q |
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| T |
41689587 |
aataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagac |
41689488 |
T |
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| Q |
117 |
ttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctcaaccgctgaaccaagcttgaaccaccagcaattgcttgt |
216 |
Q |
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| T |
41689487 |
ttctggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctcaaccgctgagccaagcttgaaccaccaacaattgcttgt |
41689388 |
T |
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| Q |
217 |
ttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcgaaaactcattaacctgtgttgaacctggcagcttcacag |
316 |
Q |
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| T |
41689387 |
ttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcgaaaactcattaacccgtgttgaacctggtagcttcacag |
41689288 |
T |
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| Q |
317 |
tcactacgtctcgcaatattctaggt |
342 |
Q |
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| T |
41689287 |
tcactacgtctcgcaatattctaggt |
41689262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 41682275 - 41682163
Alignment:
| Q |
66 |
tgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaa |
165 |
Q |
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| T |
41682275 |
tgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagacttccagtgacttccctccttcaatttatgtgcgtgtccaaatcatggaa |
41682176 |
T |
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| Q |
166 |
aaccctaatctca |
178 |
Q |
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| T |
41682175 |
aaccctaatctca |
41682163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 41682083 - 41682029
Alignment:
| Q |
248 |
atctattcttacccttt-aagccattgttcgaaaactcattaacctgtgttgaac |
301 |
Q |
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| T |
41682083 |
atctattcttaccctttgaagccattgttcgaaaactcattgacccgtgttgaac |
41682029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 45096245 - 45096147
Alignment:
| Q |
80 |
ttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca |
178 |
Q |
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| T |
45096245 |
ttgccggaagaactcatcgtggaaatcctcctccgactttcggtgaaatctctccttcaatacaagtgtgtgtgcaaaacctggaaaaccctactctca |
45096147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 44669486 - 44669426
Alignment:
| Q |
81 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt |
141 |
Q |
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| T |
44669486 |
tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt |
44669426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 44688762 - 44688702
Alignment:
| Q |
81 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt |
141 |
Q |
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| T |
44688762 |
tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt |
44688702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 44005579 - 44005483
Alignment:
| Q |
81 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctc |
177 |
Q |
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| T |
44005579 |
tgccggaagaactcatcgttgatatccttttgaagcttccggtgagatccctccttcaatgtaagtgcgtttgcaaatcttggaaaaccctaatctc |
44005483 |
T |
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