View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_2D_low_35 (Length: 321)

Name: NF7577_2D_low_35
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_2D_low_35
NF7577_2D_low_35
[»] chr5 (6 HSPs)
chr5 (244-321)||(12812731-12812808)
chr5 (244-321)||(12749639-12749716)
chr5 (254-321)||(12812593-12812660)
chr5 (244-316)||(12812667-12812739)
chr5 (244-316)||(12749575-12749647)
chr5 (266-321)||(12749501-12749556)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 12812808 - 12812731
Alignment:
Q  244 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccata 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812808 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccata 12812731  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 12749716 - 12749639
Alignment:
Q  244 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccata 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12749716 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctaccccaccaccata 12749639  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 12812660 - 12812593
Alignment:
Q  254 cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccata 321  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12812660 cctcctccagccccacctccttcaccacctccatagccagaatcaccatgctctcccccaccaccata 12812593  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 12812739 - 12812667
Alignment:
Q  244 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccacca 316  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||  | ||||||||||||||||||    
T  12812739 accaccatagcctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccacca 12812667  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 12749647 - 12749575
Alignment:
Q  244 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccacca 316  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||  | ||||||||||||||||||    
T  12749647 accaccataacctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccacca 12749575  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 12749556 - 12749501
Alignment:
Q  266 ccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccata 321  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  12749556 ccacctccttcaccgcctccatagccagaatcaccatgctctcccccaccaccata 12749501  T

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