View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_41 (Length: 303)
Name: NF7577_2D_low_41
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 11901002 - 11900713
Alignment:
| Q |
1 |
gtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggct |
100 |
Q |
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| T |
11901002 |
gtctgagaaagcttcgttctcttacattaaggagtattcccaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggct |
11900903 |
T |
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| Q |
101 |
ttatgattgccatggtctaactgacctaacagaaagcataggtaatctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11900902 |
ttatgattgccatggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctg |
11900803 |
T |
|
| Q |
201 |
cccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
290 |
Q |
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| T |
11900802 |
cccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaacccgacacaggt |
11900713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11861516 - 11861805
Alignment:
| Q |
1 |
gtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggct |
100 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| ||||| ||||| | || |||||| | |
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| T |
11861516 |
gtctgaaaaaccttcgttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggat |
11861615 |
T |
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| Q |
101 |
ttatgattgccatggtctaactgacctaacagaaagcataggtaatctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctg |
200 |
Q |
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| T |
11861616 |
ttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctg |
11861715 |
T |
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| Q |
201 |
cccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
290 |
Q |
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| T |
11861716 |
cccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
11861805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11829417 - 11829706
Alignment:
| Q |
1 |
gtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggct |
100 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| |||| ||||| | || || ||| | |
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| T |
11829417 |
gtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaacgtgaaaactttgaaagacttgaggat |
11829516 |
T |
|
| Q |
101 |
ttatgattgccatggtctaactgacctaacagaaagcataggtaatctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctg |
200 |
Q |
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||||||||| |||||| ||||| || ||||||| |||||||| |||||||| |||| | ||| ||| |||||||||||||||||||||||| ||| |
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| T |
11829517 |
ttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttagattctctt |
11829616 |
T |
|
| Q |
201 |
cccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
290 |
Q |
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| T |
11829617 |
cccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
11829706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 12040311 - 12040596
Alignment:
| Q |
1 |
gtctgagaaagcttcgttctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggct |
100 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| || | | || | |||||||||| || | |||||||| |
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| T |
12040311 |
gtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtcccttcctcagggattcgagattgtgaactctttacaagtcttaaggct |
12040410 |
T |
|
| Q |
101 |
ttatgattgccatggtctaactgacctaacagaaagcataggtaatctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctg |
200 |
Q |
| |
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|||||||||||| ||| ||||| || | ||||||||| | || || |||| |||| ||||| ||| |||| ||||||||||| ||||||| |||| |
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| T |
12040411 |
ttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagttagattctctg |
12040510 |
T |
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| Q |
201 |
cccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacac |
286 |
Q |
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| T |
12040511 |
cccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgttattgccaaggtgtcaaccagacac |
12040596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 11733223 - 11733485
Alignment:
| Q |
18 |
tctcttacattaaggagtattccaaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtc |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||| || | | | ||| ||||||||| || ||| | ||||||||| |||||||||||| | || |
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| T |
11733223 |
tctcttactttaaggagtattccaaaactagtgacccttacacgcggatttggaaacttgaaatcattgaaagatttaaggatttatgattgccctagtt |
11733322 |
T |
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| Q |
118 |
taactgacctaacagaaagcataggtaatctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaat |
217 |
Q |
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||||| | || |||||| ||||| ||||||||||| ||| | |||| ||| ||||||||||||||| | | |||| ||||||||| || ||| || |
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| T |
11733323 |
taactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaa |
11733422 |
T |
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| Q |
218 |
gctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaacc |
280 |
Q |
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||| ||| ||| ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
11733423 |
gctcacgtcactatttaccttgatcattatggactgccccttgttattgccaaggtgtcaacc |
11733485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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