View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_43 (Length: 288)
Name: NF7577_2D_low_43
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_43 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 18990168 - 18989998
Alignment:
| Q |
17 |
tataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgattgaatctatctactaaactatataggtcaatcaatgtccat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18990168 |
tataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgattgaatctatctactaaactatataggacaatcaatgtccat |
18990069 |
T |
|
| Q |
117 |
tttgtttacttttttgccgttataagggtattttcgtcaattggtaattggaagtctttcccatatatatg |
187 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18990068 |
tttttttacttttttgcccttataagggtattttcgtcaattggtaattggaagtctttcccatatatatg |
18989998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 18994710 - 18994651
Alignment:
| Q |
17 |
tataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgatt |
76 |
Q |
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| T |
18994710 |
tataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgatt |
18994651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 11694273 - 11694200
Alignment:
| Q |
84 |
tctactaaactatataggtcaatcaatgtccattttgtttacttttttgccgttataagggtattttcgtcaat |
157 |
Q |
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| T |
11694273 |
tctactaaactatataggacaatcaatgtccatttttttgacatttttgcccttatggggatatttttgtcaat |
11694200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 1619883 - 1619799
Alignment:
| Q |
82 |
tatctactaaactatataggtcaatcaatgtccattttgtttacttttttgccgttataagggtattttcgtcaattggtaattg |
166 |
Q |
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|||||||||||||||||||| |||| |||||||||| ||||| ||||||| ||||| ||||||||| || |||| ||||||| |
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| T |
1619883 |
tatctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattg |
1619799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 20235099 - 20235047
Alignment:
| Q |
24 |
aaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgatt |
76 |
Q |
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||||||| || ||||||||||| ||||||||| || |||||||||| |||||| |
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| T |
20235099 |
aaatgctctataagggcattgtgcccaataacctcatttaccctttgatgatt |
20235047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 22129083 - 22129031
Alignment:
| Q |
24 |
aaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgatt |
76 |
Q |
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||||||| || ||||||||||| ||||||||| || |||||||||| |||||| |
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| T |
22129083 |
aaatgctctataagggcattgtgcccaataacctcatttaccctttgatgatt |
22129031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 23915419 - 23915524
Alignment:
| Q |
82 |
tatctactaaactatataggtcaatcaatgtccattttgtttacttttttgccgttataagggtattttcgtcaattggtaattggaagtctttcccata |
181 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915419 |
tatctactaaactatataggacaatcaatgtccattttttttacttttttgcccttataagggtattttcgtcaattggtaattggaagtctttcccata |
23915518 |
T |
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| Q |
182 |
tatatg |
187 |
Q |
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|||||| |
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| T |
23915519 |
tatatg |
23915524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 30338409 - 30338513
Alignment:
| Q |
83 |
atctactaaactatataggtcaatcaatgtccattttgttt-acttttttgccgttataagggtattttcgtcaattggtaattggaagtctttcccata |
181 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
30338409 |
atctactaaactatataggacaatccatgtccatttttttttacttttttgcccttataggggtattttcgtcaattggtaattggaagtctttccctta |
30338508 |
T |
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| Q |
182 |
tatat |
186 |
Q |
| |
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||||| |
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|
| T |
30338509 |
tatat |
30338513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 32574570 - 32574487
Alignment:
| Q |
83 |
atctactaaactatataggtcaatcaatgtccattttgtttacttttttgccgttataagggtattttcgtcaattggtaattg |
166 |
Q |
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||||||||||||||||||| |||| |||||||||| ||||| ||||||| ||||| ||||||||| || |||| ||||||| |
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| T |
32574570 |
atctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattg |
32574487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 8309 - 8372
Alignment:
| Q |
17 |
tataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgattgaat |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8309 |
tataagtaaatgctttacaagggcattgttcccaataacttcatttaccctttaatgattgaat |
8372 |
T |
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Target: scaffold0074 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 50749 - 50808
Alignment:
| Q |
17 |
tataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgatt |
76 |
Q |
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|||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
50749 |
tataagtaaacgctttacaagggcattgtgcccaataacctcatttaccctttaatgatt |
50808 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 1688192 - 1688276
Alignment:
| Q |
84 |
tctactaaactatataggtcaatcaatgtcc-attttgtttacttttttgccgttataagggtattttcgtcaattggtaattgg |
167 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||| ||||| |||||||| |||| ||||||||||| ||||||||||||| |
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| T |
1688192 |
tctactaaactatataggacaatccatgtccgtttttttttacctttttgcccttatggaggtattttcgttaattggtaattgg |
1688276 |
T |
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