View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_50 (Length: 280)
Name: NF7577_2D_low_50
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 34331864 - 34331681
Alignment:
| Q |
79 |
caccaatgttgcaagctttaattaagctataaggtcatgtgcatcatgcatgtgcaagtgcaacaaaacaaaattgtaacgatgtatcaatttttgatca |
178 |
Q |
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| T |
34331864 |
caccaatgttgcaagctttaattaagctataaggtcatgtgcatcatgcatgtgcaagtgcaacaaaacaaaattgtaacgatgtatcaatttttgatca |
34331765 |
T |
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| Q |
179 |
ttcatgagtgagtgactgagttttgatcatcaatcatcatggtcatgcctaggcaaaattaaagggtttgccacgttcgtgatg |
262 |
Q |
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| T |
34331764 |
ttcattcatgagtgagtgagttttgatcatcaatcatcatggtcatgcctaggcaaaattaaagggtttgccacgttcgtgatg |
34331681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34331887 - 34331972
Alignment:
| Q |
1 |
tactaatacaagatttcttgatatgtcactgtggggtcactcaccctttgcttgatagaaggaaaaatagaaagccttcaccaatg |
86 |
Q |
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| T |
34331887 |
tactaatacaagatttcttgatatgtcactgtggggtcacccaccctttgcttgatagaaggaaaaatagaaagccttcaccaatg |
34331972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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