View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_52 (Length: 278)
Name: NF7577_2D_low_52
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 34353431 - 34353171
Alignment:
| Q |
1 |
ttactatatttcaatcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgt |
100 |
Q |
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| T |
34353431 |
ttactatatttcaatcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgt |
34353332 |
T |
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| Q |
101 |
tatgtgatctgagaattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttc |
200 |
Q |
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| T |
34353331 |
tatgtgatctgagaattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttc |
34353232 |
T |
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| Q |
201 |
agctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatg |
261 |
Q |
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| T |
34353231 |
agctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatg |
34353171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 34359045 - 34358795
Alignment:
| Q |
12 |
caatcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctg |
111 |
Q |
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| T |
34359045 |
caatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctg |
34358946 |
T |
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| Q |
112 |
agaattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccag |
211 |
Q |
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| T |
34358945 |
agaattctcaacaaacaacaatggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccag |
34358846 |
T |
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| Q |
212 |
gatcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatgt |
262 |
Q |
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| T |
34358845 |
gatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgt |
34358795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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