View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_2D_low_56 (Length: 256)

Name: NF7577_2D_low_56
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_2D_low_56
NF7577_2D_low_56
[»] chr3 (3 HSPs)
chr3 (21-256)||(52712599-52712834)
chr3 (21-256)||(52721420-52721655)
chr3 (24-255)||(52698783-52699014)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 52712599 - 52712834
Alignment:
Q  21 ggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaaggcaatgggaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52712599 ggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgttcggtattaccgtttccaaaagccaatgggaag 52712698  T
Q  121 cccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgaggttgagacc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712699 cccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgaggttgagacc 52712798  T
Q  221 acacactctgatattattggcgctcgcaagcttcct 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  52712799 acacactctgatattattggcgctcgcaagcttcct 52712834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 52721420 - 52721655
Alignment:
Q  21 ggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaaggcaatgggaag 120  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  52721420 ggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagccaatgggaag 52721519  T
Q  121 cccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgaggttgagacc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||| ||||||||||||    
T  52721520 cccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttccgtagaaaatgaacctactctctatgaggttgagacc 52721619  T
Q  221 acacactctgatattattggcgctcgcaagcttcct 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  52721620 acacactctgatattattggcgctcgcaagcttcct 52721655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 52698783 - 52699014
Alignment:
Q  24 gttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaaggcaatgggaagccc 123  Q
    |||||||||||| | | ||||||||||||||| || ||||||| ||| |  | || |  ||| ||| |||||| ||||| |||||  |||||||||||||    
T  52698783 gttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttggtattccgtattatcgttttcaaaaaccaatgggaagccc 52698882  T
Q  124 ttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgaggttgagaccaca 223  Q
     || |||||||||||||||||||||||||| ||  | |||||||||| | |||||||||| |||||||||||  || ||||||| |||||||| ||||||    
T  52698883 attcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctcagtagaaaatgaaactcctctctatgaggttgaaaccaca 52698982  T
Q  224 cactctgatattattggcgctcgcaagcttcc 255  Q
     |||||||||||||||| ||||||||||||||    
T  52698983 tactctgatattattggtgctcgcaagcttcc 52699014  T

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