View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_2D_low_60 (Length: 240)
Name: NF7577_2D_low_60
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_60 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14174618 - 14174842
Alignment:
| Q |
1 |
tttttgaacagacttaagttcaaaattaatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
14174618 |
tttttgaacagacttaagttcaaaattaatcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattggagagatagataat |
14174717 |
T |
|
| Q |
101 |
ggtagcaagggcggtgatgccaacatcggaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagat |
200 |
Q |
| |
|
|| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174718 |
ggcatctagggcggtgatgccaacatcggaagaggaaatagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagat |
14174817 |
T |
|
| Q |
201 |
atctctatcaattcctccatatatt |
225 |
Q |
| |
|
|| ||||||||||| |||||||||| |
|
|
| T |
14174818 |
atgtctatcaattcgtccatatatt |
14174842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 951991 - 952202
Alignment:
| Q |
14 |
ttaagttcaaaattaatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
951991 |
ttaagttcaaaattaatcaaagttgaatcataattttcgctgctagatatatctgtcacggctggatgaattggagagattgataatggcagcaagggcg |
952090 |
T |
|
| Q |
114 |
gtgatgccaacatcggaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaatt |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
952091 |
gtggtgccaacatcggaagaggaagtagcaacaatcacaacatagaaaaagagtctctaattgcccttgtaatttcctttatcagatatctctatcaatt |
952190 |
T |
|
| Q |
214 |
cctccatatatt |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
952191 |
cctccatatatt |
952202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 9462240 - 9462178
Alignment:
| Q |
30 |
tcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagaga |
92 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||| ||| || | |||||||||||||||| |
|
|
| T |
9462240 |
tcaaaattgaatcataattttcgctgccagatatacatgtcacggtcggatgaattggagaga |
9462178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 10714542 - 10714738
Alignment:
| Q |
29 |
atcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcg |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10714542 |
atcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattggagagattgataatggcagcaagggtggtgatgccaacatcg |
10714641 |
T |
|
| Q |
129 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10714642 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
10714738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 10928312 - 10928508
Alignment:
| Q |
29 |
atcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcg |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10928312 |
atcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattggagagattgataatggcagcaagggtggtgatgccaacatcg |
10928411 |
T |
|
| Q |
129 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10928412 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
10928508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 8922131 - 8922009
Alignment:
| Q |
106 |
caagggcggtgatgccaacatcggaagaggaagtagca--acaatcacaacaaagaaaaagagtctctaattgccct-tgtaacttcctttctcagatat |
202 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||| |||| |||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
8922131 |
caagggcggcgatgcgaacatcggaagagaaagtagcagcacaaacacaacgaagaaaaacagtgtctaatcgccctctgtaacttcctatctcagatat |
8922032 |
T |
|
| Q |
203 |
ctctatcaattcctccatatatt |
225 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
8922031 |
ctctatccattcctccacatatt |
8922009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 40723472 - 40723281
Alignment:
| Q |
34 |
agttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcggaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
40723472 |
agttgaatcataattttcgcggctagatatacctgtcacggccggataaattggagagattgataatggcaacaagggcggtgatgccaacatcggaaga |
40723373 |
T |
|
| Q |
134 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723372 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
40723281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 33288196 - 33288260
Alignment:
| Q |
28 |
aatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagaga |
92 |
Q |
| |
|
||||||| ||||||||||||||| || | | ||||||||||| || | |||||||||||||||| |
|
|
| T |
33288196 |
aatcaaaattgaatcataattttggctggtggatatacctgtcacggtcggatgaattggagaga |
33288260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 258427 - 258236
Alignment:
| Q |
34 |
agttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcggaaga |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
258427 |
agttgaatcataattttcgctgctagatatacctgtcatggctggatgaattggagagattgataatggcagcaaaggcggtgatgccaacatcggaaga |
258328 |
T |
|
| Q |
134 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
225 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258327 |
ggaagtagcaacagtcacaacaaagaaaaagagtctctaatttcccttgtaacttcctttctcagatatctctatcaattcctccatatatt |
258236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University