View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_2D_low_7 (Length: 904)
Name: NF7577_2D_low_7
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 885
Target Start/End: Original strand, 13871929 - 13872810
Alignment:
| Q |
1 |
aactaccctgtctagggttcactggtggtgcaacagagaacgtgtgcaccaccgacaacatgaggctacatcttgagggcaagaaaggagaagagaggtc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
13871929 |
aactaccctgtctagggttcactggtggtgcaatagagaacgtgtgcaccaccgacagcatgaggctacatcttgagggaaagaaaggagaagaggggtc |
13872028 |
T |
|
| Q |
101 |
ctctctattttcaattgggattatnnnnnnnnnnnnnnnntaacacttcaaattaaaatgtaaaagaaaccaatttttaagatactgaatacacattttc |
200 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| |
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| T |
13872029 |
ctctctattttcatttgggattataaaaaaataaaaaa--taacacttcaaattaaaatgtaagagaaatcaatttttaagataatgaataaacattttc |
13872126 |
T |
|
| Q |
201 |
taagaaaatacttctatatttaagttattaacttatgtctcaatgacacaagttaatattttcctttgttttaatcacgatttgaatttgtgctctttca |
300 |
Q |
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|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
13872127 |
taagaaaatacttctatatttagattcttaacttatgtctcaaggacacaagttaatattttactttgttttaatcacgatttaaatttgtgctctttca |
13872226 |
T |
|
| Q |
301 |
aacaattcatatttatttgaaatttattgaccatttgaattcaactacttataataattttttagaaacaattacttatatagtatttggtctaatagta |
400 |
Q |
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| T |
13872227 |
aacaattcatatttatttgaaatttattgaccatttgaattcaactacttataataattttt-agaaacaattacttatatagtatttggtctaatagta |
13872325 |
T |
|
| Q |
401 |
aatcttgcatattcaactccctccatatcatattaagtattgtattnnnnnnntcatatattataaaatgtatcattttatatttaaataaatatgttta |
500 |
Q |
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| T |
13872326 |
aatcttgcatattcaactccctccatatcatattatgtattgtattaaaaaaatcatatattataaaatgtatcattttatatttaaataaatatgttta |
13872425 |
T |
|
| Q |
501 |
gtctatgtaaatagggcttacttgaatttgatccatatacttactaatccttccaatattagcttgcaattaccaatcaattatgtttttgccctaatta |
600 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |
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| T |
13872426 |
gtccatgtaaacagggcttacttgaatttgatccatatacttactaatccttccaatattagtttgcaattactaatcaattatgtttttgtcctaatta |
13872525 |
T |
|
| Q |
601 |
tattgtattacttatgtggcacgtgattactgatgttgcacaatctgattgggataaaaccttgacgactcaacattttccatccaaaataaccacttca |
700 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13872526 |
tattgtattacttatgtggcacatgattactgatgttgcacaatttgactgggataaaaccttgacgactcaacattttccacccaaaataaccacttca |
13872625 |
T |
|
| Q |
701 |
gccttaatgaatccaaccacgcgagaaagatcaaaacattcattgagggttgatggaatggatagttgagaatgtatcttaggggttgaggtggcggtag |
800 |
Q |
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| T |
13872626 |
cccttaatgaatccaaccacgcgagaaagaccaaaacattcattgagggttgatggaatggatagttgagaatgtattttaggggttgaggtggcggtag |
13872725 |
T |
|
| Q |
801 |
gaggtgagatcttggagggaagatgatatttgaagggtgattttgatgctggagattttgccgaaaaccattattgatgtgtgtg |
885 |
Q |
| |
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| T |
13872726 |
gaggcgagatcttggagggaagatgatatttgaagggtgattttgctgccggagattttgccgaaaaccatttttggtgcgtgtg |
13872810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 607 - 690
Target Start/End: Complemental strand, 13873227 - 13873144
Alignment:
| Q |
607 |
attacttatgtggcacgtgattactgatgttgcacaatctgattgggataaaaccttgacgactcaacattttccatccaaaat |
690 |
Q |
| |
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|||||||||| |||| ||||||||||| || ||||||||| ||||||| |||||||| |||| | ||||||||| ||||||| |
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| T |
13873227 |
attacttatgcggcatgtgattactgacgtggcacaatctagctgggatagaaccttgatgacttagcattttccaaccaaaat |
13873144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 786 - 871
Target Start/End: Complemental strand, 30588381 - 30588296
Alignment:
| Q |
786 |
ttgaggtggcggtaggaggtgagatcttggagggaagatgatatttgaagggtgattttgatgctggagattttgccgaaaaccat |
871 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| || |||| ||||||| || ||||| |
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| T |
30588381 |
ttgaggtggcggtaggaggtgagatcttggagggaagatgagatacggagggtgcttttgccgccggaggttttgccaaagaccat |
30588296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 4228869 - 4228960
Alignment:
| Q |
175 |
ttttaagatactgaatacacattttctaagaaaatacttctatatttaagttattaacttatgtctcaatgacacaagttaatattttcctt |
266 |
Q |
| |
|
|||||||||| ||||| |||| ||| || |||| | ||||| |||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
4228869 |
ttttaagatattgaatgcacaagttccaaaaaaaaaattctacatttttcttattaacttatgtctcaaagacacaagttaacattttcctt |
4228960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 4239225 - 4239266
Alignment:
| Q |
225 |
ttattaacttatgtctcaatgacacaagttaatattttcctt |
266 |
Q |
| |
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||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
4239225 |
ttattaacttatgcctcaaagacacaagttaacattttcctt |
4239266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 12453942 - 12453992
Alignment:
| Q |
172 |
aatttttaagatactgaatacacattttctaagaaaatacttctatattta |
222 |
Q |
| |
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| T |
12453942 |
aatttttaagatattgaatacacaacttcaaataaaatacttctatattta |
12453992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 33439967 - 33439926
Alignment:
| Q |
175 |
ttttaagatactgaatacacattttctaagaaaatacttcta |
216 |
Q |
| |
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|||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
33439967 |
ttttaagatattgaatacatattttttaagaaaatacttcta |
33439926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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