View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_2D_low_9 (Length: 897)
Name: NF7577_2D_low_9
Description: NF7577_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_2D_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 846; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 21 - 866
Target Start/End: Complemental strand, 3056970 - 3056125
Alignment:
| Q |
21 |
aaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056970 |
aaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
3056871 |
T |
|
| Q |
121 |
tctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttcctcttat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056870 |
tctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttcctcttat |
3056771 |
T |
|
| Q |
221 |
gccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056770 |
gccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggc |
3056671 |
T |
|
| Q |
321 |
tttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056670 |
tttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttg |
3056571 |
T |
|
| Q |
421 |
gcttctgtttttcttcattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcaatctttcacttccactcccgcaaaatccaag |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056570 |
gcttctgtttttcttcattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcaatctttcacttccactcccgcaaaatccaag |
3056471 |
T |
|
| Q |
521 |
taaacgaaccaagttcttgtgatgagtgagaccaatgacattcagctcattcctgaattcccgatgagcttgatccaacagaaaactgttcaacttcttc |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056470 |
taaacgaaccaagttcttgtgatgagtgagaccaatgacattcagctcattcctgaattcccgatgagcttgatccaacagaaaactgttcaacttcttc |
3056371 |
T |
|
| Q |
621 |
actgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattggtag |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056370 |
actgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattggtag |
3056271 |
T |
|
| Q |
721 |
cttcttcaagctcttcataagtgaagcaacgcaaattggtttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaaaatgaa |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056270 |
cttcttcaagctcttcataagtgaagcaacgcaaattggtttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaaaatgaa |
3056171 |
T |
|
| Q |
821 |
ggaggtacaaacacatattgctacaatgaatacaacattgagaata |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056170 |
ggaggtacaaacacatattgctacaatgaatacaacattgagaata |
3056125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 21 - 864
Target Start/End: Complemental strand, 3036102 - 3035253
Alignment:
| Q |
21 |
aaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036102 |
aaagcaccatcattgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
3036003 |
T |
|
| Q |
121 |
tctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttcctcttat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3036002 |
tctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttattcctcttat |
3035903 |
T |
|
| Q |
221 |
gccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggc |
320 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
3035902 |
gccggtgttggttttgctttgattcatgttcaacaactttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttttgaggc |
3035803 |
T |
|
| Q |
321 |
tttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttg |
420 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3035802 |
tttatgtcacaatgaatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttg |
3035703 |
T |
|
| Q |
421 |
gcttctgtttttcttcattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcaatctttcacttccactcccgcaaaatccaag |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
3035702 |
gcttctgtttttcttcattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcagtctttcacttccactctcacaaaatccaag |
3035603 |
T |
|
| Q |
521 |
taaacgaaccaagttcttgtgatgagtgagaccaatgacattcagctcattcctgaattcccgatgagcttgatccaacagaaaactgttcaacttcttc |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
3035602 |
taaacgaaccaagttcttgtgatgagtgagaccaatggcattcagttcattcctaaattccttatgagcttgatccaacataaaactgttcaactttttt |
3035503 |
T |
|
| Q |
621 |
actgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattggtag |
720 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3035502 |
actgccacacgagctttggaagcggtgttgttgttgacgactccttcataaacaataccaaaagctccccttcctagctctttgtcgaatccattagtag |
3035403 |
T |
|
| Q |
721 |
cttcttcaagctcttcataagtgaagcaacgcaaattgg------tttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaa |
814 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| || |||||| | || |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3035402 |
cttcttcaagctctgcataagtgaagcaacgcaaatgggattcaatttcaaaactagcgtcacttttgctaactcttctaagcttcttcttgtacttaaa |
3035303 |
T |
|
| Q |
815 |
aatgaaggaggtacaaacacatattgctacaatgaatacaacattgagaa |
864 |
Q |
| |
|
||||| |||||| | | ||| || |||||||| |||||| ||||||||| |
|
|
| T |
3035302 |
aatgagggaggtgctgatacagatagctacaatcaatacagcattgagaa |
3035253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 21 - 866
Target Start/End: Original strand, 3069942 - 3070796
Alignment:
| Q |
21 |
aaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3069942 |
aaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaatta |
3070041 |
T |
|
| Q |
121 |
tctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttcctcttat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070042 |
tctcaagtagcactacaccataactatacacatcaaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttcctcttat |
3070141 |
T |
|
| Q |
221 |
gccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
3070142 |
gccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggc |
3070241 |
T |
|
| Q |
321 |
tttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttg |
420 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
3070242 |
tttatgtcacaatggatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctatacctattgcaagttctagccttagtttccaacttg |
3070341 |
T |
|
| Q |
421 |
gcttctgtttttctt------cattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcaatctttcacttccactcccgcaaaa |
514 |
Q |
| |
|
| || ||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | | ||||| |
|
|
| T |
3070342 |
gtttttgtttctcatcatcagcattgaaaagaaaacttgccaaagtgccattgctcatgtactcataaacaagcaatctttcacttctacactcacaaaa |
3070441 |
T |
|
| Q |
515 |
tccaagtaaacgaaccaagttcttgtgatgagtgagaccaatgacattcagctcattcctgaattcccgatgagcttgatccaacagaaaactgttcaac |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |
|
|
| T |
3070442 |
tccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggaattcaactcattcctgaattccctatgggcttgatccaacaaaaaactgtttaac |
3070541 |
T |
|
| Q |
615 |
ttcttcactgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccat |
714 |
Q |
| |
|
|| | ||||||||| ||||||||| || ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070542 |
ttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtcaaatccat |
3070641 |
T |
|
| Q |
715 |
tggtagcttcttcaagctcttcataagtgaagcaacgcaaattgg------tttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgta |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
3070642 |
tggtagcttcttcaagctcttcataagtgaagcaacacaaattggatttaatttcaacacacgtgtcacctttgataactcttctaagctttttcttgtg |
3070741 |
T |
|
| Q |
809 |
ctgaaaaatgaaggaggtacaaacacatattgctacaatgaatacaacattgagaata |
866 |
Q |
| |
|
||||||||| |||||| | ||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
3070742 |
ctgaaaaat---ggaggtgctgacacagattgttacaatcaatacaacattgagaata |
3070796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 3048990 - 3049081
Alignment:
| Q |
30 |
tctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaattat |
121 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3048990 |
tctttgtagcagtcataagcccattcagttaagatagctttgtattcattttcttgatccatttcttcaacacatcttctacatgaaattat |
3049081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 4e-53; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 165 - 421
Target Start/End: Complemental strand, 21457736 - 21457475
Alignment:
| Q |
165 |
gtgataggcatgtttttaaa-ccattcaagtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggct |
263 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || ||||| |||| |||| |||||| |||||||||||| ||| ||||||||||||||| || ||| |
|
|
| T |
21457736 |
gtgatatgcatgtttttaaaaccattcaagtgaaagataccattttcttccccttatggcagtgttggtttcgctcaaattcatgttcaacaattttgct |
21457637 |
T |
|
| Q |
264 |
aatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggctttatgtcacaa-----tggataatcctagtgatgcactcttc |
358 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||| | ||| |||||| ||||| ||||||| |
|
|
| T |
21457636 |
aatccaaagtcagaaattcttgcattgaagtaatcatcaatgggtatgttttgaggctttatgtcacaagtcaatagatgatcctattgatggactcttc |
21457537 |
T |
|
| Q |
359 |
atgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttccaatttgg |
421 |
Q |
| |
|
||||||| | || ||| |||||||||| ||||||||| ||| || ||||||||||||||||| |
|
|
| T |
21457536 |
atgtaaa-ataccagtactctagctatccctattgcattttcaagtcttagtttccaatttgg |
21457475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 28445582 - 28445438
Alignment:
| Q |
193 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
292 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| | ||| | ||||||||| || ||| ||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
28445582 |
gtgcaacatatcccttagttcctcttattccagtttcggtatggctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgta |
28445483 |
T |
|
| Q |
293 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
337 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| || |||||||| |
|
|
| T |
28445482 |
ttgatcatctagaagtatattttgtggctttatatcgcaatggat |
28445438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 28488189 - 28488045
Alignment:
| Q |
193 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
292 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| | || | ||||||||| || ||| | ||| | |||||||||||| ||||| ||||||||| | |
|
|
| T |
28488189 |
gtgcaacatacccttttgttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28488090 |
T |
|
| Q |
293 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
337 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
28488089 |
ttgatcatctagaagtatattttgtggctttatatcacaatggat |
28488045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 28466428 - 28466284
Alignment:
| Q |
193 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
292 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| | || | ||||||||| || ||| | ||| | |||||||||||| ||||| ||||||||| | |
|
|
| T |
28466428 |
gtgcaacataccctttggttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28466329 |
T |
|
| Q |
293 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
337 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
28466328 |
ttgatcatctagaagtatattttgtggctttatatcacaatggat |
28466284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 28438041 - 28437989
Alignment:
| Q |
285 |
gcattgaaataatcatccaggagtatgttttgaggctttatgtcacaatggat |
337 |
Q |
| |
|
|||||| ||| |||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
28438041 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggat |
28437989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 28445739 - 28445708
Alignment:
| Q |
33 |
ttgtagcaatcataagcccaatcagttaaaat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445739 |
ttgtagcaatcataagcccaatcagttaaaat |
28445708 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 28488343 - 28488302
Alignment:
| Q |
36 |
tagcaatcataagcccaatcagttaaaattgctttgtcttca |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28488343 |
tagcaatcataagcccaatcagttaaaatccctttttcttca |
28488302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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