View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_high_1 (Length: 419)
Name: NF7577_high_1
Description: NF7577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 47381 - 47771
Alignment:
| Q |
14 |
atattcattacttaccaagagccagggtcgcggtggaagtttgtaattgctttctaaccttgactctaaaatatttgtttgacatttatcttgagttgac |
113 |
Q |
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| T |
47381 |
atattcattacttaccaagagccagggtcgcggtggaagtttgtaattgctttctaaccttgactctaaaatatttgtttgacatttatcttgagttgac |
47480 |
T |
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| Q |
114 |
agtgatagttgttcttgattcttgtccaatgtcgtcctagactttttgccagattctttggatccacaattagagcgattaaatttttctacacaattag |
213 |
Q |
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| T |
47481 |
agtgatagttgttcttgattcttgtccaatgtcgtcctagactttttgtcagattctttggatccacaattagagcgattaaatttttctacacaattag |
47580 |
T |
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| Q |
214 |
ttgaatctagataattagaacaagaagacccttcaatcttttttccttcaccttcaatctctagtttagtctttcccttgaagcttctcattttattcaa |
313 |
Q |
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| T |
47581 |
ttgaatctagataattagaacaagaagacccttcaatcttttttccttcaccgtcaatctctagattagtctttcccttgaagcttctcattttattcaa |
47680 |
T |
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| Q |
314 |
gggattttgagacatcgacatatagcttgcaggagaaaaagcggatgcagtacgaatttcacatccaagtaattttcttttagctatattt |
404 |
Q |
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| T |
47681 |
gggattttgagacatcgacatatagcttgcaggagaaaaagcggatgcagtacgaatttcacatccaagtaattttcttttagctatattt |
47771 |
T |
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