View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_high_2 (Length: 380)
Name: NF7577_high_2
Description: NF7577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 45083248 - 45082899
Alignment:
| Q |
19 |
atagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtacgtggcacaacttcaagaacgtgt |
118 |
Q |
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| T |
45083248 |
atagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtacgtggcacaacttcaagaacgtgt |
45083149 |
T |
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| Q |
119 |
gaaagagctagaagaagacatcaagaagaaaggtgcaggatcattgatcaccataacaagatctcatctccttgatgacaatgacactgcaatgggtgaa |
218 |
Q |
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| T |
45083148 |
gaaagagctagaagaagacatcaagaagaaaggtgcgggatcattgatcaccataacaagatctcatctccttgatgacaatgacactgcaatgggtgaa |
45083049 |
T |
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| Q |
219 |
atgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagc |
318 |
Q |
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| T |
45083048 |
atgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagt |
45082949 |
T |
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| Q |
319 |
aaaaggagattctggtcaatataattttgcagcttcaaattcttcatctc |
368 |
Q |
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| T |
45082948 |
aaaaggagattctggtcaatataattttgcagcttcaaattcttcatctc |
45082899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 367
Target Start/End: Original strand, 45039362 - 45039690
Alignment:
| Q |
39 |
tatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtacgtggcacaacttcaagaacgtgtgaaagagctagaagaagaca |
138 |
Q |
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| T |
45039362 |
tatctaatgtctgtgtagattgataaggttcatgtggtaacggaagctatcaattacatgaaacaacttgaagaacgtttgaaagagctagaagaagaca |
45039461 |
T |
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| Q |
139 |
tcaagaagaaaggtgcaggatcattgatcaccataacaagatctcatctccttgatgacaatgacactgcaatgggtgaaatgaacactaaagaatgtta |
238 |
Q |
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| T |
45039462 |
ttaagaagaaagatgcaggatcattgagcaccataacaagatctcgtgttttaattgacaaagacattgcaatcggtgaaatgaacactgaagaatgtta |
45039561 |
T |
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| Q |
239 |
tcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagcaaaaggagattctggtcaat |
338 |
Q |
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| T |
45039562 |
cgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtggaatgcaagaagggattgtggtcaat |
45039661 |
T |
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| Q |
339 |
ataattttgcagcttcaaattcttcatct |
367 |
Q |
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| T |
45039662 |
ataatgtcccagcttcaacttcttcatct |
45039690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 45065336 - 45065474
Alignment:
| Q |
101 |
acaacttcaagaacgtgtgaaagagctagaagaagacatcaagaagaaaggtgcaggatcattgatcaccataacaagatctcatctccttgatgacaat |
200 |
Q |
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||||||| |||| ||| |||||||||| |||||| |||| |||||||||| |||||||||| ||| || |||||||||||| ||| | || |||||| |
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| T |
45065336 |
acaacttgaagagcgtttgaaagagcttgaagaaaacattaagaagaaagatgcaggatcaatgagcaacataacaagatcccatgtactaattgacaaa |
45065435 |
T |
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| Q |
201 |
gacactgcaatgggtgaaatgaacactaaagaatgttat |
239 |
Q |
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| T |
45065436 |
gacactacgataggtgaaatgaacactgaagaatgttat |
45065474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 29377095 - 29377444
Alignment:
| Q |
19 |
atagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtacgtggcacaacttcaagaacgtgt |
118 |
Q |
| |
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|||||||||| || || | ||||||||||| |||||||| || ||||||||||| || |||||| |||| ||||| ||||||| |||||||||| |
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| T |
29377095 |
atagaagctacaataaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaacttgaagaacgtgt |
29377194 |
T |
|
| Q |
119 |
gaaagagctagaagaagacatcaagaagaaaggtgcaggatcattgatcaccataacaagatctcatctccttgatgacaatgacactgcaatgggtgaa |
218 |
Q |
| |
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|||| ||||| |||||| ||||| ||||||| |||| ||| ||| ||||||||||||||| ||| || | |||||| ||||||||||| | |||| |
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| T |
29377195 |
taaagggctaggagaagatatcaaaaagaaagacacagggtcagtgagcaccataacaagatcccatatcttaattgacaaagacactgcaatagatgaa |
29377294 |
T |
|
| Q |
219 |
atgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagc |
318 |
Q |
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||||| ||| |||||||||| ||| |||||| || || |||| |||||| |||||||||||||| ||||||||||||||||||| ||||| | || |
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| T |
29377295 |
atgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgc |
29377394 |
T |
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| Q |
319 |
aaaaggagattctggtcaatataattttgcagcttcaaattcttcatctc |
368 |
Q |
| |
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|| ||| |||| ||||||||||||| | |||||||| ||||||||||| |
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| T |
29377395 |
aagaggggattgtggtcaatataatgtcccagcttcagcttcttcatctc |
29377444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 1916994 - 1916962
Alignment:
| Q |
104 |
acttcaagaacgtgtgaaagagctagaagaaga |
136 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
1916994 |
acttcaagaacgtgtgagagagctagaagaaga |
1916962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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