View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_low_3 (Length: 339)
Name: NF7577_low_3
Description: NF7577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 4792996 - 4792688
Alignment:
| Q |
17 |
tgtgttgtgtaaatagactcttgaagtggaggatcatttgttttgttggtgtagctttgccagaagggtttagtactcaatcctttggtggatttgaaca |
116 |
Q |
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| T |
4792996 |
tgtgtggtgtacatagactcttgaagtggagaatcatttgttttgtcggtgtagctttgccagaagggtttagtactcaatcctttggtggatttgaaca |
4792897 |
T |
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| Q |
117 |
tgagtgattttagctgcaaatgatatttctctacttgactaatgtacaaactcgtcctcaaacaaa--acattgaaaggggttaatgtttatttggcagg |
214 |
Q |
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| T |
4792896 |
tgagtgattttacctacaaatgatatt---ctacttgactaatgtacaaactcgtcctcaaacaaagaacattgaaaggggttaatgcttatttggcagg |
4792800 |
T |
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| Q |
215 |
gttaatgcttatttgacatgccacagcgtgaaagtttgggagactatgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcg |
314 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792799 |
gttaatgcttatatgacatgccacaacgtgaaagtttgggaggctatgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcg |
4792700 |
T |
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| Q |
315 |
aagttagttttg |
326 |
Q |
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| T |
4792699 |
aagttagttttg |
4792688 |
T |
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