View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7578_high_1 (Length: 230)
Name: NF7578_high_1
Description: NF7578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7578_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42899292 - 42899509
Alignment:
| Q |
1 |
agcagctcagatgggtgcaaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttggctctgccaccaac |
100 |
Q |
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| T |
42899292 |
agcagctcagatgggtgcaaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaac |
42899391 |
T |
|
| Q |
101 |
aacatgataaactcaaatggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899392 |
aacatgataaactcaaatggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaactt |
42899491 |
T |
|
| Q |
201 |
cttttgaggatacttttg |
218 |
Q |
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|||||||||||||||||| |
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| T |
42899492 |
cttttgaggatacttttg |
42899509 |
T |
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