View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7578_low_1 (Length: 365)
Name: NF7578_low_1
Description: NF7578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7578_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 53038104 - 53037793
Alignment:
| Q |
15 |
atcaaacaagattacaaggcaacacacatatgcttatgaaatgaatattggtttccttataccaacattgctacatataattcaattaaattttatactt |
114 |
Q |
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| T |
53038104 |
atcaaacaagattacaaggcaacacacatatgcttatgaaatgaatatt---------------acattgctacatataattcaattaaattttatactt |
53038020 |
T |
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| Q |
115 |
attttgtttaggttatttgtaaagtctagaattatccaacttaattatttttagtttctgcatgtcaatacatccatgcatggatcacacaatgtcttga |
214 |
Q |
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| T |
53038019 |
attttgtttaggttatttataaagtctagaattacccaactta----tttttagtttctgcatgtcaatacatccatg----gatcacacaatgtcttga |
53037928 |
T |
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| Q |
215 |
taaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatcatcataactaggaagaagcaaagaatctc |
314 |
Q |
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| T |
53037927 |
taaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatcatcataactaggaagaagcaaagaatctc |
53037828 |
T |
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| Q |
315 |
catctgaatcatgtgttcctggccccatataaact |
349 |
Q |
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| T |
53037827 |
catctgaatcatgtgttcctggccccatataaact |
53037793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 39995636 - 39995801
Alignment:
| Q |
186 |
atccatgcatggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatc |
285 |
Q |
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| T |
39995636 |
atccatccatggatcacacaatgtcttgataaaaatgcttcttaaagacatccatatggatctcttgtagacaaataataaccaacaaagaaccatcatc |
39995735 |
T |
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| Q |
286 |
atcataactaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaac |
348 |
Q |
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| T |
39995736 |
attgggactaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaac |
39995801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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