View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7578_low_2 (Length: 396)
Name: NF7578_low_2
Description: NF7578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7578_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 38556215 - 38556566
Alignment:
| Q |
21 |
ggagcaaccgtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattg |
120 |
Q |
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| T |
38556215 |
ggagcaaccgtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattg |
38556314 |
T |
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| Q |
121 |
gaggcaag-atttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattga |
219 |
Q |
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| T |
38556315 |
gaggcaaatatttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattga |
38556414 |
T |
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| Q |
220 |
gcctcatctctcccagataggactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagag |
319 |
Q |
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| T |
38556415 |
gcctcatctctcccagataggactcatctcttcatct----aataaataaaagctagttgattaaatgaatggatccatgtgataatgatatatatagag |
38556510 |
T |
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| Q |
320 |
tggtaccataccgtaatttttggagcatttgaatcttctctgaagctgagtatgct |
375 |
Q |
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| T |
38556511 |
tggtaccatactgtaatttttggagcatttgaatcttctctgaagctgagtatgct |
38556566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 38548116 - 38548465
Alignment:
| Q |
21 |
ggagcaaccgtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattg |
120 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
38548116 |
ggagcaaccgtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattg |
38548215 |
T |
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| Q |
121 |
gaggcaagatttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgag |
220 |
Q |
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| T |
38548216 |
gaggcaagatttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaa |
38548315 |
T |
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| Q |
221 |
cctcatctctcccagataggactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagagt |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
38548316 |
ccacatctctcccagataggactcatctcttcatctaataaataaa----agctagttgattaattgaatggatccatgtgataatgatatatatagagt |
38548411 |
T |
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| Q |
321 |
ggtaccataccgtaatttttggagcatttgaatcttctctgaagctgagtatgct |
375 |
Q |
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| T |
38548412 |
ggtaacatattgtaatttg-ggtgcacgtcaatcttctctgacgctgtgtatgct |
38548465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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