View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7578_low_4 (Length: 319)
Name: NF7578_low_4
Description: NF7578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7578_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1083356 - 1083500
Alignment:
| Q |
1 |
aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat |
100 |
Q |
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| T |
1083356 |
aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat |
1083455 |
T |
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| Q |
101 |
caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa |
145 |
Q |
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| T |
1083456 |
caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa |
1083500 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 34899903 - 34899972
Alignment:
| Q |
250 |
gagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttga |
319 |
Q |
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| T |
34899903 |
gagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttga |
34899972 |
T |
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