View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7579_low_1 (Length: 641)
Name: NF7579_low_1
Description: NF7579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7579_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 16 - 627
Target Start/End: Complemental strand, 40382121 - 40381512
Alignment:
| Q |
16 |
atatcaccgagtttgattctttgattaacagtggagacctctttacattgtttaaactattaggtcaagtccactaagagacaagttagcatgaatgctt |
115 |
Q |
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| T |
40382121 |
atatcaccgagtttgattctttgattaatagtggagacctctttacattgtttaaactattaggtcaagtccactaagagacaagttagcatgaatgctt |
40382022 |
T |
|
| Q |
116 |
attagctagctaagaggactatttttaatctttgttcataacttttattattgatgttcctacttatattttgagcatttgcattggttttactcaaccc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
40382021 |
attagctagctaagaggactatttttaatctttgttcataacttttattattgatgttcttacttat--tttgagcatttgcattggttttactcaaccc |
40381924 |
T |
|
| Q |
216 |
cnnnnnnnntctgatattggacaagagatttttattctatctttgatgatttacaaattaaagaactagtaattgtaataacatatctgactgattcatc |
315 |
Q |
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| T |
40381923 |
caaaaaaaatctgatattggacaagagatttttattctatctttgatgatttacaaattaaagaactagtaattgtaataacatatctgactgattcatc |
40381824 |
T |
|
| Q |
316 |
atacacaaaaaacatcaatgatttgctcacttttcttggtgtgtctcacaaattatttctcaagtacttgcatcttcaggttggatatcattgttgttga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381823 |
atacacaaaaaacatcaatgatttgctcacttttcttggtgtgtttcacaaattatttctcaagtacttgcatcttcaggttggatatcattgttgttga |
40381724 |
T |
|
| Q |
416 |
acatgatccgtggcttccccatgctgaaattcagaacccttgcattcatattatacttgattactccatcatataacaactttcttatataatgctctat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381723 |
acatgatccgtggcttccccatgctgaaattcagaacccttgcattcatattatacttgattactccatcatataacaactttcttatataatgctctat |
40381624 |
T |
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| Q |
516 |
gtctgaaccaatcaaccgaagtgtgtattcattcaatggagcaccctgatttcaattatcaaaaaggttaatataattctaacacataattggctcaaaa |
615 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40381623 |
gtctgaaccaatcaagcgaagtgtgtattcattcaatggagcaccctgttttcaattatcaaaaaggttaatataattctaacacttaattggctcaaaa |
40381524 |
T |
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| Q |
616 |
ctagcacatact |
627 |
Q |
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|||||||||||| |
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| T |
40381523 |
ctagcacatact |
40381512 |
T |
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