View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7579_low_2 (Length: 516)
Name: NF7579_low_2
Description: NF7579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7579_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Original strand, 50594687 - 50595193
Alignment:
| Q |
10 |
aagaatatcaataaggcaaccgtaatgctcaatttctggttctatatgataactcgcactcataacatcaaaatatttcaacccctcatcccacaagcca |
109 |
Q |
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| T |
50594687 |
aagaagatcaataaggcaaccgtaatgctcaatttctggttctatatgataactcgcactcataacatcaaaatatttcaacccctcatcccacaagcca |
50594786 |
T |
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| Q |
110 |
gtatgagagcaagccagcaaaacaccaagaaaggttatctcattaggagctactcgcaccttacacatttcttcaaagagttgaattgcctcataacctt |
209 |
Q |
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| T |
50594787 |
gtatgagagcaagccagcaaaacaccaagaaaggttatctcattaggagctactcgcaccttacacatttcttcaaagagttgaattgcctcataacctt |
50594886 |
T |
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| Q |
210 |
tcccatgattagccagccctccaatcatggtactccaagaaatcacatccttctcaaccaactgatcaaacaagttccatgcttcatcaatgcaaccaca |
309 |
Q |
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| T |
50594887 |
tcccatgattagccagccctccaatcatggtactccaagaaatcacatccttctcaaccaactgatcaaacaagttccaagcttcatcaatgcaaccaca |
50594986 |
T |
|
| Q |
310 |
cttggcatacatttcaatcaacgcattgcatataccagtcttccgcaaaaacccatttttgtcagcatacatatgaatccatttcccaacctcaagagct |
409 |
Q |
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| T |
50594987 |
cttggcatacatttcaatcaacgcattgcatataccagtcttccgcaaaaacccatttttgtcagcatacatatgaatccatttcccaacctcaagagct |
50595086 |
T |
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| Q |
410 |
ccaagctgtgcacatgctggcaaaacagctataatactaatctcatccggttcaatacccaccatttgcatctcccgaaaaacatccaatgcatcaccat |
509 |
Q |
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| T |
50595087 |
ccaagctgtgcacatgctggcaaaacagctataatactaatctcatccggttcaatacccaccatttgcatttcccgaaaaacatccaatgcatcaccat |
50595186 |
T |
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| Q |
510 |
aacaacc |
516 |
Q |
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| T |
50595187 |
aacaacc |
50595193 |
T |
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