View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7580_high_1 (Length: 845)
Name: NF7580_high_1
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_1 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 151 - 827
Target Start/End: Original strand, 28975464 - 28976144
Alignment:
| Q |
151 |
tcggatgcatacttgcgcattgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975464 |
tcggatgcatacttgcgcattgtatttctctgattatgcatatcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttc |
28975563 |
T |
|
| Q |
251 |
ccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttcca |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28975564 |
ccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacctccaaggtgcagcagtcttcca |
28975663 |
T |
|
| Q |
351 |
ttgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgacc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975664 |
ttgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgacc |
28975763 |
T |
|
| Q |
451 |
ccctgttcataaattggctgagtattaggaat----nnnnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtg |
546 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
28975764 |
ccctattcataaattggctgagtaatacgaatagagagagagagagagtctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatg |
28975863 |
T |
|
| Q |
547 |
cgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggag |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975864 |
cgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggag |
28975963 |
T |
|
| Q |
647 |
gatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaatctgtccgtaagtgatcaatcaaatcacgtaacttcaatcaaca |
746 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975964 |
gatgcagctgccggcaataacaactctgcctgctagtcgaacggcatagcagaaagtctgtccgtaagtgatcaatcaaatcacgtaacttcaatcaaca |
28976063 |
T |
|
| Q |
747 |
gaattggatggcaaagttgcttatgtgaatattccaaattgatttttcgacacaaatcaacaaagcaaaaagcaccgaaag |
827 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976064 |
gaattggatggcaaagttgcttatgtgaatattccaaattgatttttcgacacaaatcaacaaagcaaaaagcaccgaaag |
28976144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 59 - 461
Target Start/End: Complemental strand, 29041802 - 29041402
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
29041802 |
gttgcattgtcaagaactagcggcgtgccaaccgcactagcaatttcacgtagagtctgctccatctgatattcttgtggcagtgccatcaatcggatcc |
29041703 |
T |
|
| Q |
159 |
atacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
|||||||| ||| || || || || |||| ||| |||||||| || | |||||||||||| ||||| ||| |||| ||||| || | ||||||| ||| |
|
|
| T |
29041702 |
atacttgcacatgagtgttcctttgtttatacatatcaaaatcgacagtccattcaaataagcgtaaaacccccggtttcaaatttatcgttcccactgc |
29041603 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
||||||| |||||| |||||||||| || ||||||||||||| ||| | ||| |||||| ||| || ||||||||||| |||||||||||| ||||| |
|
|
| T |
29041602 |
ccaaacagtttgcatatcagattcattggcaaaaaagaattcctaataacccctacctagagacagtaacgtccaagg---agcagtcttccactgtttt |
29041506 |
T |
|
| Q |
358 |
cgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgtt |
457 |
Q |
| |
|
||| ||| | |||||||| ||||| || || ||||| |||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
29041505 |
ttaagtttgccctcaatttctttcgatgcgtaaggtttgtctcatttgttgagaaccaatcttccacggagatttctcttacacacattgaccccctttt |
29041406 |
T |
|
| Q |
458 |
cata |
461 |
Q |
| |
|
|||| |
|
|
| T |
29041405 |
cata |
29041402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 694
Target Start/End: Complemental strand, 29041323 - 29041173
Alignment:
| Q |
544 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg |
643 |
Q |
| |
|
||||||||| || || |||| |||||||| ||| | ||||||| ||||||| |||||||| || || | ||| |||||||||||||||||| ||||| |
|
|
| T |
29041323 |
gtgcgatgccaccagagctttagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttg |
29041224 |
T |
|
| Q |
644 |
gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcata |
694 |
Q |
| |
|
|| | | |||||||||||| | ||| || ||||| ||||||| |||||| |
|
|
| T |
29041223 |
gatggtatagctgccggcaaggagaacactacctgccagtcgaaaggcata |
29041173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 59 - 730
Target Start/End: Original strand, 33066221 - 33066888
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
33066221 |
gttgcattgtcaacaacgagcggcgtgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcgaatcc |
33066320 |
T |
|
| Q |
159 |
atacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
|||||||| || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
33066321 |
gtacttgcgtatgtgtatctctatgattatgcatatcaaaatccactgaccattcaaataaacgtaacacccccggcttcaagttcacggttcccattgc |
33066420 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
33066421 |
ccaaacaatttgcaaatcagattcagtggcaaaaaagaattcataaaagcccctacctaaagatagcaacgaccaaggtgcaatagtcttccattgtttc |
33066520 |
T |
|
| Q |
358 |
cgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgtt |
457 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33066521 |
cgaagtttgtcttcaatttccttctacgcatagggtttatgtcctttgtttagaaccaaccttccacgaatgtttctcttacacacattga-cccctgtt |
33066619 |
T |
|
| Q |
458 |
cataaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaa |
557 |
Q |
| |
|
||||||||||||||||| || |||| |||| || |||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33066620 |
cataaattggctgagtaatacgaat----agagagagtctccccacagattgtaggttgtggcatattgtcattggtagctttgtcgtgcgatgcaacaa |
33066715 |
T |
|
| Q |
558 |
gtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgc |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| || ||| ||||||||||||| |||||||| |
|
|
| T |
33066716 |
gtgcttgtgcaaaggaccgcggcggtggttgtggtgatggaaccgccgttgtggagggttgtgccatgagaaatgacgcagctttggagggtgcagctgt |
33066815 |
T |
|
| Q |
658 |
cggcaataataactctgcctgctagtcgaacggcatagcagaaaatctgtccgtaagtgatcaatcaaatcac |
730 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
33066816 |
cggcaataacaactctgcctgccagtcgaacgacatagtagaaagtatgtccgtaagtgatcaatcaaatcac |
33066888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 62 - 474
Target Start/End: Original strand, 21493169 - 21493582
Alignment:
| Q |
62 |
gcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgcata |
161 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||||| || || | || | ||||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
21493169 |
gcattgtcaaggacttgcggcgtgccaaccgcactagcaatctctcgcaaggtctgctccatccaatattcttgtggcagtgccataagtcggatccata |
21493268 |
T |
|
| Q |
162 |
cttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgccca |
260 |
Q |
| |
|
||| ||||| ||| |||||||| |||||||| ||||| ||||| | ||||||||||| ||||| ||| | ||||||||||| | ||||||||||||||| |
|
|
| T |
21493269 |
cttacgcatgtgtgtttctctggttatgcatatcaaagtccacagtccattcaaatagtcgtaaaacccctggcttcaagtttaaagttcccattgccca |
21493368 |
T |
|
| Q |
261 |
aacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttccga |
360 |
Q |
| |
|
|||| |||||| |||||||||| || |||||| ||||||||| |||||| |||||| ||| ||||| | ||||||||||| ||||||||||||||| | | |
|
|
| T |
21493369 |
aacattttgcatatcagattcattggcaaaaacgaattcatagaagcccctacctagagaaagcaaagaccaaggtgcagtagtcttccattgttttcta |
21493468 |
T |
|
| Q |
361 |
agcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcat |
460 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || || || ||||||||||| |||| ||| |||||||||||||||||||| | |||||||||| ||| | |
|
|
| T |
21493469 |
agcttgtcctcgatttccttcgatgcatacggcttgtcccctttgttgaggaccagcctcccacgaaggtttctcttacaaaagttgacccccttttcgt |
21493568 |
T |
|
| Q |
461 |
aaattggctgagta |
474 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
21493569 |
acaatggctgagta |
21493582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 702
Target Start/End: Original strand, 21493648 - 21493806
Alignment:
| Q |
544 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg |
643 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||| |||| |||| ||||||| ||| | || || || | ||||||||||||||| | || || |
|
|
| T |
21493648 |
gtgcgatgccaccagagcttgtgcaaaggacttcggtggtgcctgtgctgctggagtcgcagctggtgaagggattgccatgggagatggcgttgccatg |
21493747 |
T |
|
| Q |
644 |
gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaa |
702 |
Q |
| |
|
| | |||||||| ||||||| | |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
21493748 |
ggtgttgcagctgtcggcaatgaaaactctgcctgccagtcgaacggcatggcagaaaa |
21493806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33066195 - 33066233
Alignment:
| Q |
1 |
cataatgtccaaaaagtcttttcaaggttgcattgtcaa |
39 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
33066195 |
catagtgtccaaaaagtctttacaaggttgcattgtcaa |
33066233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 117 - 701
Target Start/End: Original strand, 10304313 - 10304894
Alignment:
| Q |
117 |
gttccatccaatattcttgtggcagtgccatcaatcggatgcatacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
10304313 |
gttccatccaatattcttgtggcagtgccatgaatcggatccatacttgcgcatgtgtatttctctgattatgcatatcaaaatctattgaccattcaaa |
10304412 |
T |
|
| Q |
216 |
taaacgtaacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacct |
315 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
10304413 |
taatcgtaacaccctcggcttcaagttcacagttcccattgcccaaacaatttgcaaat---attcaatggcaaaaaagaattcataaaagcccctacct |
10304509 |
T |
|
| Q |
316 |
aaagatagcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcc--tttgttgagaac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
10304510 |
aaagatagcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgacgcatagggtttatctcctttttgtttagaac |
10304609 |
T |
|
| Q |
414 |
caaccttccacgaaggtttctcttacacacattgacccc-ctgttcataaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtag |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||| ||||||| |||||||| |
|
|
| T |
10304610 |
caaccttccacgaaggtttctcttacacacattgacccctgtgttcataaattggccgagtaatacgaat----agagagagtctcaccacggattgtag |
10304705 |
T |
|
| Q |
513 |
gttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtgga |
612 |
Q |
| |
|
||||||| | |||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10304706 |
gttgtggcagattgccgtaggtagctttgccgtgcgatgcgacaagtgcttgtgcaaaggaccgcgacggtggttgtggtgctggaaccgccgttgtgga |
10304805 |
T |
|
| Q |
613 |
cggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
701 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||| | ||||||||| ||||||||| |
|
|
| T |
10304806 |
gggcagtgccatgagagatggtgcagctttggagggcgcagctgtcggcaataacaactctgcctgccaatcgaacggcctagcagaaa |
10304894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 117 - 474
Target Start/End: Original strand, 10288597 - 10288956
Alignment:
| Q |
117 |
gttccatccaatattcttgtggcagtgccatcaatcggatgcatacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10288597 |
gttccatccaatattcttgtggcagtgccatcaatcggatccatacttgcgcatgtgtatttctctgattatgcatatcaatatccactgaccattcaaa |
10288696 |
T |
|
| Q |
216 |
taaacgtaacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacct |
315 |
Q |
| |
|
||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
10288697 |
taatcgtaacatccccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtggcaaaaaagaattcataaaagcccctacct |
10288796 |
T |
|
| Q |
316 |
aaagatagcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcc--tttgttgagaac |
413 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
10288797 |
aaagatagcaacgtccaaggtgca-tagtattccattgttttcgaagcttgtcttcaatttcctttgacgcatagggtttatctcctttttgtttagaac |
10288895 |
T |
|
| Q |
414 |
caaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
474 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10288896 |
caaccttccacaaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
10288956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 59 - 461
Target Start/End: Complemental strand, 20950994 - 20950591
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20950994 |
gttgcattgtcaagaactagcggcgtgccaaccacactagcaatttcacgtagagtctgctccatccaatattcttgtggcagtgccatcaatcggatcc |
20950895 |
T |
|
| Q |
159 |
atacttgcgcattg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
|||||||| ||| | | || |||||||||| ||| |||||||| || || ||||||||| ||||| ||| ||| ||||| | | ||||||| ||| |
|
|
| T |
20950894 |
atacttgcacatgggtgttcctctgattatacatatcaaaatcgacactccgttcaaataagcgtaaaacccccgatttcaaatctatcgttcccactgc |
20950795 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
||||||| |||||| |||||||||| | |||||||||||| |||| | ||| | |||| |||||| ||||||||||| |||| ||||||||| |||||| |
|
|
| T |
20950794 |
ccaaacagtttgcatatcagattcattagcaaaaaagaatttataataacccctgcctagagatagtaacgtccaaggagcagtagtcttccactgtttc |
20950695 |
T |
|
| Q |
358 |
cgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgtt |
457 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| || |
|
|
| T |
20950694 |
ttaagcttgtccacaatttccttcgacgcgtagggtttgtctcctttgttgagaaccaatcttccacggatatttctcttacacacattgaccccctttt |
20950595 |
T |
|
| Q |
458 |
cata |
461 |
Q |
| |
|
|||| |
|
|
| T |
20950594 |
cata |
20950591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 543 - 701
Target Start/End: Original strand, 10289007 - 10289165
Alignment:
| Q |
543 |
cgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagcttt |
642 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10289007 |
cgtgcgatgcgacaagtgcttgtgcaagggaccgcggcggcggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagcttt |
10289106 |
T |
|
| Q |
643 |
ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
701 |
Q |
| |
|
||||| ||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||| |
|
|
| T |
10289107 |
ggagggcgcaactgtcggcaataacaactctgcctgccaatcgaacggcttagcagaaa |
10289165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 544 - 701
Target Start/End: Complemental strand, 20950512 - 20950355
Alignment:
| Q |
544 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttg-tggacggcagtgccatgggagatggtgcagcttt |
642 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| ||||||| ||||||| |||||||| || |||| | || |||||||||||| | |||||||| |
|
|
| T |
20950512 |
gtgcgatgccaccagagcttgagcaaaggaacgcggctgtggttgaggtgctgaaaccgccgctgctgga-gtcaaagccatgggagattgcgcagcttt |
20950414 |
T |
|
| Q |
643 |
ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
701 |
Q |
| |
|
||| | || |||||| ||||| | | |||||||||| | ||||| ||||||||||||| |
|
|
| T |
20950413 |
ggatggtgtagctgctggcaaggagagctctgcctgccattcgaaaggcatagcagaaa |
20950355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 62 - 678
Target Start/End: Complemental strand, 9283322 - 9282713
Alignment:
| Q |
62 |
gcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgcata |
161 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| |||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
9283322 |
gcattgtcaagaactagtggcgtgccaaccgcactggcaatttccgatagagtacgtttcattcaatattgttgtggcagtgccatcaatcggatccata |
9283223 |
T |
|
| Q |
162 |
cttgcgcatt-gtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgccca |
260 |
Q |
| |
|
|||| || | || || || ||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9283222 |
cttgtgcttgagtgttcctatgattatgcatattaaaatccaccgaccattcaaataaacgtaacacccccggcttcaagttcacagttcccattgccca |
9283123 |
T |
|
| Q |
261 |
aacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttccga |
360 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9283122 |
aacaatttgcaaatca---ttagtggcaaaaaagaagtcataaaagcccctacctaaagatagcaacgtccaaggtgtagcagtcttccattgtttccga |
9283026 |
T |
|
| Q |
361 |
agcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcat |
460 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
9283025 |
agcttgtcctcaatttccttcgacgtatagggttta-atcctttgttaagaaccaaccttccacaaaggtttctcttacacacattgaccccctgttaat |
9282927 |
T |
|
| Q |
461 |
aaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtg |
560 |
Q |
| |
|
| | || ||||| | || |||| ||||| | |||||||||| || | ||| || || || |||| | ||||||||||||||||| |
|
|
| T |
9282926 |
acactgactgagcagtacgaatggagagagc----ctcacaacgggttgtaggttgcggcagattatcattagtggcttggctgtgcgatgcaacaagtg |
9282831 |
T |
|
| Q |
561 |
cttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccgg |
660 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| | |||||| | |||||||||||||||||| || ||||||||| || ||||| ||| |
|
|
| T |
9282830 |
cttgtgcaaaggaccgcggtggtggttgtggtgctgggaccgcagctgtggaagacagtgccatgggagatggcacaactttggagggtgtagctgtcgg |
9282731 |
T |
|
| Q |
661 |
caataataactctgcctg |
678 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
9282730 |
caataacaactctgcctg |
9282713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 474
Target Start/End: Original strand, 38501250 - 38501666
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
38501250 |
gttgcattgtcaagaactagcggcgtgccaaccgcactagcaatttcacgtagagtctgctccatccaatattcttgtggcaatgccatcaatcggatcc |
38501349 |
T |
|
| Q |
159 |
atacttgcgcattg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
|||| ||||||| | | || |||||||||| ||| |||||||| || | |||||||||||| ||||| ||| |||| ||||| || | |||||||| ||| |
|
|
| T |
38501350 |
atacctgcgcatgggtgttcctctgattatacatatcaaaatcgacagtccattcaaataagcgtaaaacccccggtttcaaatttatagttcccactgc |
38501449 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
||||||| |||||| |||||||||| | ||||||||||||| ||||| ||| |||||| |||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
38501450 |
ccaaacagtttgcatatcagattcattagcaaaaaagaattcgtaaaaacccctacctagagatagtaacgtccaaggagcagcagtcttccactgtttc |
38501549 |
T |
|
| Q |
358 |
cgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgtt |
457 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
38501550 |
ttaagcttgtcctcaatttccttcgacgcgtagggtttgtctcctttgttgagaaccaatcttccacagagatttctcttacacacattgaccccctttt |
38501649 |
T |
|
| Q |
458 |
cataaattggctgagta |
474 |
Q |
| |
|
|||| | ||| |||||| |
|
|
| T |
38501650 |
catacactggttgagta |
38501666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 700
Target Start/End: Original strand, 38501748 - 38501888
Alignment:
| Q |
560 |
gcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccg |
659 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||||||| || ||||| || || | ||| |||||||||||||| || |||||||| | || |||||||| |
|
|
| T |
38501748 |
gcttgagcaaaggaacgcggctgtggttgaggtgctgaaatcgccgctgctgaagtcagagccatgggagatggcgctgctttggatggtgtagctgccg |
38501847 |
T |
|
| Q |
660 |
gcaataataactctgcctgctagtcgaacggcatagcagaa |
700 |
Q |
| |
|
|||| | | |||||||||| ||||||| |||||||||||| |
|
|
| T |
38501848 |
gcaaagagagctctgcctgccagtcgaaaggcatagcagaa |
38501888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 177; Significance: 6e-95; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 59 - 474
Target Start/End: Original strand, 4782 - 5193
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
4782 |
gttgcattgtcaagaactagcggcgtgccaaccgcactagcaatttcacgtagagtctgctccatccaatattcttgtggcagtgccatcaattggatcc |
4881 |
T |
|
| Q |
159 |
atacttgcgcattg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
||||||| |||| | | || |||||||||| ||| ||||| | | |||||||||||| ||||| ||| |||| ||||| || | ||||||| ||| |
|
|
| T |
4882 |
atacttgtgcatgggtgttcctctgattatacatatcaaa-----cagtccattcaaataagcgtaaaacccccggtttcaaatttatcgttcccactgc |
4976 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||| ||| | ||| |||||| |||||| ||||||||||| ||| |||||||||| |||||| |
|
|
| T |
4977 |
ccaaacaatttgcatataagattcattagcaaaaaagaattcgtaataacccctacctagagatagtaacgtccaaggagcaacagtcttccactgtttc |
5076 |
T |
|
| Q |
358 |
cgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgtt |
457 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| ||||||||||||| |||||| |||||||| || ||||||||||||||| ||||||||| || |
|
|
| T |
5077 |
ttaagcttgtcctcaatttccttcgacgcgtagggtttgtctcctttgttgacaaccaatcttccacggagatttctcttacacacactgaccccctttt |
5176 |
T |
|
| Q |
458 |
cataaattggctgagta |
474 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
5177 |
catacaccggctgagta |
5193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 5332 - 5413
Alignment:
| Q |
620 |
gccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
701 |
Q |
| |
|
|||||||||||||| ||| ||||||| | || |||||||||||| | | |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
5332 |
gccatgggagatggcgcaactttggatggtgtagctgccggcaaagagagctctgcttgccagtcgaaaggcatagcagaaa |
5413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 170; Significance: 9e-91; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 62 - 474
Target Start/End: Original strand, 46609 - 47022
Alignment:
| Q |
62 |
gcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgcata |
161 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||||| || || | || ||||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
46609 |
gcattgtcaaggacttgcggcgtgccaaccgcactagcaatatctcgcaaggtcttctccatccaatattcttgtggcagtgccataagtcggatccata |
46708 |
T |
|
| Q |
162 |
cttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgccca |
260 |
Q |
| |
|
||||||||| ||| |||||||| |||||||| ||||||||| | | ||||||||||| ||||| ||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
46709 |
cttgcgcatgtgtgtttctctggttatgcatatcaaaatccgcagtccattcaaatagtcgtaaaacccccggcttcaagtttaaagttcccattgccca |
46808 |
T |
|
| Q |
261 |
aacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttccga |
360 |
Q |
| |
|
|||| |||||| |||||||||| || |||||||||||||||| |||||| |||||| ||| ||||| | |||| ||||| ||||||||||||||| | | |
|
|
| T |
46809 |
aacattttgcatatcagattcattggcaaaaaagaattcatagaagcccctacctagagaaagcaatgatcaagctgcagtagtcttccattgttttcta |
46908 |
T |
|
| Q |
361 |
agcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcat |
460 |
Q |
| |
|
|||||||| | ||||||||||| ||||| || || ||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||||| ||||| |
|
|
| T |
46909 |
agcttgtccttgatttccttcgatgcatacggcttgtctcctttgctgaggaccaaccttccacgaaggtttatcttacagaagttgacccccttttcat |
47008 |
T |
|
| Q |
461 |
aaattggctgagta |
474 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
47009 |
acaatggctgagta |
47022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 59 - 367
Target Start/End: Complemental strand, 20381013 - 20380704
Alignment:
| Q |
59 |
gttgcattgtcaagaactagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgccatcaatcggatgc |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20381013 |
gttgcattgtcaagaactagcggcgtgccaaccgcactagaaatttcacgtagagtctgctccatccaatattcttgtggcagtgccatcaatcggatcc |
20380914 |
T |
|
| Q |
159 |
atacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgc |
257 |
Q |
| |
|
|||| ||||||| || || |||||||||| ||| |||||||| || | |||||||||||| ||||| ||| |||| ||||| || | ||||||| ||| |
|
|
| T |
20380913 |
atacctgcgcatgggtgttcctctgattatacatatcaaaatcgacagtccattcaaataagcgtaaaacccccggtttcaaatttatcgttcccactgc |
20380814 |
T |
|
| Q |
258 |
ccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttc |
357 |
Q |
| |
|
||||| | |||||| |||||||||| | ||||||||||||| ||||| ||| |||||| |||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
20380813 |
ccaaatagtttgcatatcagattcattagcaaaaaagaattcgtaaaaacccctacctagagatagtaacgtccaaggagcagcagtcttccattgtttc |
20380714 |
T |
|
| Q |
358 |
cgaagcttgt |
367 |
Q |
| |
|
|||||||| |
|
|
| T |
20380713 |
ttaagcttgt |
20380704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 114 - 440
Target Start/End: Original strand, 13581739 - 13582066
Alignment:
| Q |
114 |
tacgttccatccaatattcttgtggcagtgccatcaatcggatgcatacttgcgcat-tgtatttctctgattatgcatttcaaaatccactgaccattc |
212 |
Q |
| |
|
|||||||| |||||||||| ||||| | | |||| |||| || || ||||| |||| ||| ||||| ||||||||||| | ||| || || |||||| |
|
|
| T |
13581739 |
tacgttccttccaatattcctgtggtaattccattaatcatatccagacttgagcatgtgtgtttctatgattatgcatattaaagtcttttgcccattc |
13581838 |
T |
|
| Q |
213 |
aaataaacgtaacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagccctta |
312 |
Q |
| |
|
|||||||||||| | | |||| ||||| || | |||||||| |||||||| ||| ||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
13581839 |
aaataaacgtaatagccccggtttcaaatttaatgttcccatcgcccaaaccgcttgtaaatcagattctaaattaaaaaagaattcataaaaaccccta |
13581938 |
T |
|
| Q |
313 |
cctaaagatagcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaa |
412 |
Q |
| |
|
|||| |||| ||| ||||| |||||||| |||||||| |||||| | | || |||||||||| || || | || ||||||||||||||||| || | |
|
|
| T |
13581939 |
cctagagatgacaaagtccatggtgcagcggtcttccaatgtttctgtaatttcgcttcaatttcttttgatgtgtacggtttatctcctttgttaagta |
13582038 |
T |
|
| Q |
413 |
ccaaccttccacgaaggtttctcttaca |
440 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
|
|
| T |
13582039 |
caaaccttcctcgaaggtttctcttaca |
13582066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 27504781 - 27504709
Alignment:
| Q |
74 |
actagcggcatgccaaccacactagcaatttcacgtagagtacgttccatccaatattcttgtggcagtgcca |
146 |
Q |
| |
|
||||||||| |||||||| |||| || ||||| || || ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
27504781 |
actagcggcgtgccaaccgcacttgcgatttcccgaagtgtatgttccatccaatattcttgcggcagtgcca |
27504709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University