View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_11 (Length: 462)
Name: NF7580_high_11
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 52472582 - 52472149
Alignment:
| Q |
1 |
agtcattagaatgttagaaatggagggtcagaataggggccaggtggagaagtggagaacacaaaggaaaaagtgttggatttgggccctaggaagccca |
100 |
Q |
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| T |
52472582 |
agtcattagaatgttagaaatggagggtcagaataggggccaggtggagaa--------cacaaaggaaaaagtgttggatttgggccctaggaagccca |
52472491 |
T |
|
| Q |
101 |
atataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctactactactagacattgatctattagaagaaagaaggagatgatcatag |
200 |
Q |
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| T |
52472490 |
atataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctacta------gacattgatctattagaagaaagaaggagatgatcatag |
52472397 |
T |
|
| Q |
201 |
agtcacaaccaatggaaaacgctaaaaaa--cggtgattctgtttggtgaggtagaggtaaacattgaagcctttgt---ataatacttaagtggaattg |
295 |
Q |
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| T |
52472396 |
agtcacaaccaatggaaaacgctaaaaaaaacggtgattctgtttggtgaggtagaggtaaacattgaagcctttgtgtaataatacttaagtggaattg |
52472297 |
T |
|
| Q |
296 |
acattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctcagcataaaggaaaatagagaca |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52472296 |
acattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctaagcataaaggaaaatagagaca |
52472197 |
T |
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| Q |
396 |
tatcaaaacataggcaacaatcgacgggtgagactgcctccttctata |
443 |
Q |
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| T |
52472196 |
tatcaaaacataggcaacaatcgacggatgagactgcctccttctata |
52472149 |
T |
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