View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_14 (Length: 451)
Name: NF7580_high_14
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 40804945 - 40805379
Alignment:
| Q |
1 |
atgaaaagattaaccccaaccatattcagatgaacactcacaa--caaattctcaataatttctcagtacnnnnnnngcttttattttgtaagctaaggt |
98 |
Q |
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| T |
40804945 |
atgaaaagattaaccccaaccatattcagatgaacactcacaaaacaaattctcaataatttctcagtacaaaaaaagcttttattttgtaagctaaggt |
40805044 |
T |
|
| Q |
99 |
tttgaggtctctgcaacaacattgcaactacaagttcaaccacatttttccgcaatataaagcttcgcagcgtaactacaagtacgaaaagcaactcaaa |
198 |
Q |
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| T |
40805045 |
tttgaggtctctgcaacaacattgcaactacaagttcaaccacatttttccgcaatataaagcttcgcagcgtaactacaagtacgaaaagcaactcaaa |
40805144 |
T |
|
| Q |
199 |
gccatgtactacagaataaagatcacatttgctgctgccactttcagaaaacagtaagcagtaaaaaagcaagaaaacataatgaaatcaaagaagagaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805145 |
gccatgtactacagaataaagatcacatttgctgctgccactttcagaaaacagtaagcagtaaaaaagcaagaaaacataatgaaatcaaagaagagaa |
40805244 |
T |
|
| Q |
299 |
ctttataacaaaaacatgtgaggcatacaattcattagcataaagtggaaaaataagcaagaaattcaaaagagtgtacacatacatgcatgcacataat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805245 |
ctttataacaaaaacatgtgaggcatacaattcattagcataaagtagaaaaataagcaagaaattcaaaagagtgtacacatacatgcatgcacataat |
40805344 |
T |
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| Q |
399 |
ttcaaaacaagaacacttgaactaagagactgaaa |
433 |
Q |
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| T |
40805345 |
ttcaaaacaagaacacttgaactaagagactgaaa |
40805379 |
T |
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