View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_16 (Length: 434)
Name: NF7580_high_16
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 24 - 422
Target Start/End: Original strand, 35928375 - 35928770
Alignment:
| Q |
24 |
tagtaaaatcaaatgtttatctagatttaattagagtttaccagaactcataagagttcactataaaaggaggagtattcatgtgaggtagttcgttttt |
123 |
Q |
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| T |
35928375 |
tagtaaaatcaaatgtttatctagatttaattagagtttaccggaactcataagagttcactataaaagga---gtattcatgtgaggtagttcgttttt |
35928471 |
T |
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| Q |
124 |
atgactcgtaattgtaaattcgtaaaagatttcttgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaa |
223 |
Q |
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| T |
35928472 |
atgactcataattgtaaattcgtaaaagatttctcgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaa |
35928571 |
T |
|
| Q |
224 |
ataaattaataaccaggttgcactatgttctttcattttcaatatgaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactac |
323 |
Q |
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| T |
35928572 |
ataaattaataaccaggtttcactatgttctttcattttcaatataaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactac |
35928671 |
T |
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| Q |
324 |
tatgaaaatcaagttatgtcatcaatcaaaatattaactaataatatatcattcctttctatattttgatagaaatattatatcatttcttctgatgtc |
422 |
Q |
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| T |
35928672 |
tatgaaaatcaagttatgtcatcaatcaaaatattaactaataatatatcattcctttctttattttgatagaaataatatatcatttcttctgatgtc |
35928770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 35915684 - 35915725
Alignment:
| Q |
312 |
atgtttgactactatgaaaatcaagttatgtcatcaatcaaa |
353 |
Q |
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| T |
35915684 |
atgtttcactactatgaaaatgtagttatgtcatcaatcaaa |
35915725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 35922044 - 35922085
Alignment:
| Q |
311 |
catgtttgactactatgaaaatcaagttatgtcatcaatcaa |
352 |
Q |
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| T |
35922044 |
catgtttcactactatgaaaatgaacttatgtcatcaatcaa |
35922085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 35940804 - 35940852
Alignment:
| Q |
319 |
actactatgaaaatcaagttatgtcatcaatcaaaatattaactaataat |
368 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||| ||||| |
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| T |
35940804 |
actactatgaatatgaagttatgtcatcaatc-aaatattaactgataat |
35940852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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