View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_19 (Length: 399)
Name: NF7580_high_19
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 32063896 - 32063511
Alignment:
| Q |
1 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnnnngaagttatttttct |
100 |
Q |
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| T |
32063896 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagaaaaaaagaagttatttttct |
32063797 |
T |
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| Q |
101 |
aatgtttgtttagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatggattttcatcgacctt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32063796 |
aatgtttgtttagccatttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttagtgttctttgatggattttcatcgacctt |
32063697 |
T |
|
| Q |
201 |
gagaatgaacgttgtgtcttagacatgcaattggaggggaggagacttaaaaattcaannnnnnnnatgttccatgaaatgcttatatga-----nnnnn |
295 |
Q |
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| T |
32063696 |
gagaatgaacgttgtgtcttagacatgcaattgaaggggaggagacttaaaaattcaattttttttatgttccatgaaatgcttatatgattttttttat |
32063597 |
T |
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| Q |
296 |
nnnnnnnnnnngttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaat |
381 |
Q |
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| T |
32063596 |
tttttatttttgttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaat |
32063511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 32071674 - 32071442
Alignment:
| Q |
26 |
gaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnnnngaagttatttttctaatgtttgtttagccctttattctc |
125 |
Q |
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| T |
32071674 |
gaatttgatgtatttcaaactgagccatggaggctgccacgaggtttgtgaaaggaaaaaaatagttatttttctaatgttttcttagccctttattctc |
32071575 |
T |
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| Q |
126 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatggattttcatcgaccttgagaatgaacgttgtgtcttagaca |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32071574 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcctagtgttctttgatggattttcattaatcttgagaatgaacgttgtgtcttagaca |
32071475 |
T |
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| Q |
226 |
tgcaattggaggggaggagacttaaaaattcaa |
258 |
Q |
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| T |
32071474 |
tgcaattggaggggaggagacttaaaaattcaa |
32071442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 32071228 - 32071160
Alignment:
| Q |
307 |
gttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttc |
375 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32071228 |
gttgcagaaaataggtactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttc |
32071160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 32050816 - 32050760
Alignment:
| Q |
111 |
tagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaatttt |
167 |
Q |
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| T |
32050816 |
tagccctttattctttttcttatgatcattgtgttttatcaataaaaatcaaatttt |
32050760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32050897 - 32050820
Alignment:
| Q |
1 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaa |
78 |
Q |
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||||||| |||||||| | ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
32050897 |
ccaacctcttccaaatctcttgttagaatttgatgtatttcaaactgagccatggaagctgccaagaggtttgtgaaa |
32050820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 32050654 - 32050605
Alignment:
| Q |
332 |
agcataggaagtactatttctttgatctcaggaaccgtaggttcgagaat |
381 |
Q |
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|||||| || |||||||||||||||| ||||||||||||||||||||||| |
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| T |
32050654 |
agcatatgaggtactatttctttgatatcaggaaccgtaggttcgagaat |
32050605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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