View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_high_2 (Length: 723)

Name: NF7580_high_2
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_high_2
NF7580_high_2
[»] chr8 (3 HSPs)
chr8 (29-705)||(28975464-28976144)
chr8 (5-339)||(29041402-29041734)
chr8 (422-572)||(29041173-29041323)
[»] chr1 (3 HSPs)
chr1 (2-608)||(33066286-33066888)
chr1 (2-352)||(21493231-21493582)
chr1 (422-580)||(21493648-21493806)
[»] chr3 (5 HSPs)
chr3 (2-579)||(10304320-10304894)
chr3 (2-352)||(10288604-10288956)
chr3 (2-339)||(20950591-20950929)
chr3 (421-579)||(10289007-10289165)
chr3 (422-579)||(20950355-20950512)
[»] chr4 (3 HSPs)
chr4 (3-556)||(9282713-9283259)
chr4 (2-352)||(38501315-38501666)
chr4 (438-578)||(38501748-38501888)
[»] scaffold0111 (1 HSPs)
scaffold0111 (2-352)||(46671-47022)
[»] scaffold0041 (2 HSPs)
scaffold0041 (2-352)||(4847-5193)
scaffold0041 (498-579)||(5332-5413)
[»] chr7 (1 HSPs)
chr7 (2-245)||(20380704-20380948)
[»] chr6 (1 HSPs)
chr6 (85-318)||(13581833-13582066)


Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 29 - 705
Target Start/End: Original strand, 28975464 - 28976144
Alignment:
Q  29 tcggatgcatacttgcgccttgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttc 128  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975464 tcggatgcatacttgcgcattgtatttctctgattatgcatatcaaaatccactgaccattcaaataaacgtaacaccgccggcttcaagttcacagttc 28975563  T
Q  129 ccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacgtccaaggtgcagcagtcttcca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28975564 ccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagcaacctccaaggtgcagcagtcttcca 28975663  T
Q  229 ttgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgacc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975664 ttgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgacc 28975763  T
Q  329 ccctgttcataaattggctgagtattaggaat----nnnnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtg 424  Q
    |||| ||||||||||||||||||| || ||||                |||||||   ||||||||||||||||||||||||||||||||||||| | ||    
T  28975764 ccctattcataaattggctgagtaatacgaatagagagagagagagagtctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatg 28975863  T
Q  425 cgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggag 524  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975864 cgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggag 28975963  T
Q  525 gatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaatctgtccgtaagtgatcaatcaaatcacgtaacttcaatcaaca 624  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28975964 gatgcagctgccggcaataacaactctgcctgctagtcgaacggcatagcagaaagtctgtccgtaagtgatcaatcaaatcacgtaacttcaatcaaca 28976063  T
Q  625 gaattggatggcaaagttgcttatgtgaatattccaaattgatttttcgacacaaatcaacaaagcaaaaagcaccgaaag 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28976064 gaattggatggcaaagttgcttatgtgaatattccaaattgatttttcgacacaaatcaacaaagcaaaaagcaccgaaag 28976144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 29041734 - 29041402
Alignment:
Q  5 atattattgtggcagtgcaatcaatcggatgcatacttgcgcctt-gtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgtaac 103  Q
    ||||| |||||||||||| ||||||||||| ||||||||| | |  || || || || |||| ||| |||||||| || | |||||||||||| |||||     
T  29041734 atattcttgtggcagtgccatcaatcggatccatacttgcacatgagtgttcctttgtttatacatatcaaaatcgacagtccattcaaataagcgtaaa 29041635  T
Q  104 accgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatagca 203  Q
    ||| |||| ||||| || |  ||||||| |||||||||| |||||| |||||||||| || ||||||||||||| ||| | ||| |||||| ||| || |    
T  29041634 acccccggtttcaaatttatcgttcccactgcccaaacagtttgcatatcagattcattggcaaaaaagaattcctaataacccctacctagagacagta 29041535  T
Q  204 acgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttccacg 303  Q
    ||||||||||   |||||||||||| |||||   ||| ||| | |||||||| ||||| || || ||||| |||| ||||||||||||||| ||||||||    
T  29041534 acgtccaagg---agcagtcttccactgttttttaagtttgccctcaatttctttcgatgcgtaaggtttgtctcatttgttgagaaccaatcttccacg 29041438  T
Q  304 aaggtttctcttacacacattgaccccctgttcata 339  Q
     || ||||||||||||||||||||||||| ||||||    
T  29041437 gagatttctcttacacacattgacccccttttcata 29041402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 422 - 572
Target Start/End: Complemental strand, 29041323 - 29041173
Alignment:
Q  422 gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg 521  Q
    ||||||||| || || ||||  |||||||| ||| |  ||||||| ||||||| |||||||| ||  || | ||| |||||||||||||||||| |||||    
T  29041323 gtgcgatgccaccagagctttagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttg 29041224  T
Q  522 gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcata 572  Q
    || | |  ||||||||||||  | ||| || ||||| ||||||| ||||||    
T  29041223 gatggtatagctgccggcaaggagaacactacctgccagtcgaaaggcata 29041173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 2 - 608
Target Start/End: Original strand, 33066286 - 33066888
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgcct-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| |||||||| || | ||||||||  | ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  33066286 ccaatattcttgtggcagtgccatcaatcgaatccgtacttgcgtatgtgtatctctatgattatgcatatcaaaatccactgaccattcaaataaacgt 33066385  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  33066386 aacacccccggcttcaagttcacggttcccattgcccaaacaatttgcaaatcagattcagtggcaaaaaagaattcataaaagcccctacctaaagata 33066485  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    |||||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  33066486 gcaacgaccaaggtgcaatagtcttccattgtttccgaagtttgtcttcaatttccttctacgcatagggtttatgtcctttgtttagaaccaaccttcc 33066585  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcataaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtaggttgtggtat 400  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||            |||| ||  |||||||||||||||| ||    
T  33066586 acgaatgtttctcttacacacattga-cccctgttcataaattggctgagtaatacgaat----agagagagtctccccacagattgtaggttgtggcat 33066680  T
Q  401 attgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgcc 500  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||    
T  33066681 attgtcattggtagctttgtcgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgatggaaccgccgttgtggagggttgtgcc 33066780  T
Q  501 atgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaatctgtccgtaagtgatcaat 600  Q
    ||| || |||  ||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||| ||||| ||||| | ||||||||||||||||||    
T  33066781 atgagaaatgacgcagctttggagggtgcagctgtcggcaataacaactctgcctgccagtcgaacgacatagtagaaagtatgtccgtaagtgatcaat 33066880  T
Q  601 caaatcac 608  Q
    ||||||||    
T  33066881 caaatcac 33066888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 21493231 - 21493582
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgcct-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| || | |||||| ||||||| ||| | ||| |||||||| |||||||| ||||| ||||| | |||||||||||  |||    
T  21493231 ccaatattcttgtggcagtgccataagtcggatccatacttacgcatgtgtgtttctctggttatgcatatcaaagtccacagtccattcaaatagtcgt 21493330  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| | ||||||||||| | ||||||||||||||||||| |||||| |||||||||| || |||||| ||||||||| |||||| |||||| ||| |    
T  21493331 aaaacccctggcttcaagtttaaagttcccattgcccaaacattttgcatatcagattcattggcaaaaacgaattcatagaagcccctacctagagaaa 21493430  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    |||| | ||||||||||| ||||||||||||||| | ||||||||| || ||||||||||| ||||| || || || ||||||||||| |||| ||| ||    
T  21493431 gcaaagaccaaggtgcagtagtcttccattgttttctaagcttgtcctcgatttccttcgatgcatacggcttgtcccctttgttgaggaccagcctccc 21493530  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcataaattggctgagta 352  Q
    |||||||||||||||||| |  |||||||||| ||| || | ||||||||||    
T  21493531 acgaaggtttctcttacaaaagttgacccccttttcgtacaatggctgagta 21493582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 422 - 580
Target Start/End: Original strand, 21493648 - 21493806
Alignment:
Q  422 gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg 521  Q
    ||||||||| || || |||||||||||||||  ||| ||||  |||| |||||||  ||| | ||  || || | ||||||||||||||| |  ||  ||    
T  21493648 gtgcgatgccaccagagcttgtgcaaaggacttcggtggtgcctgtgctgctggagtcgcagctggtgaagggattgccatgggagatggcgttgccatg 21493747  T
Q  522 gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaa 580  Q
    |  | |||||||| ||||||| | |||||||||||| ||||||||||||| ||||||||    
T  21493748 ggtgttgcagctgtcggcaatgaaaactctgcctgccagtcgaacggcatggcagaaaa 21493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 579
Target Start/End: Original strand, 10304320 - 10304894
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgcct-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| || |||||||| ||||||||||| | ||||||||||||||||||||| |||||||| | ||||||||||||||| |||    
T  10304320 ccaatattcttgtggcagtgccatgaatcggatccatacttgcgcatgtgtatttctctgattatgcatatcaaaatctattgaccattcaaataatcgt 10304419  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||   ||||| || ||||||||||||||||||||||| ||||||||||||    
T  10304420 aacaccctcggcttcaagttcacagttcccattgcccaaacaatttgcaaat---attcaatggcaaaaaagaattcataaaagcccctacctaaagata 10304516  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcc--tttgttgagaaccaacctt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||||||    
T  10304517 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgacgcatagggtttatctcctttttgtttagaaccaacctt 10304616  T
Q  299 ccacgaaggtttctcttacacacattgacccc-ctgttcataaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtaggttgtgg 397  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| || ||||            |||||||   |||||||||||||||    
T  10304617 ccacgaaggtttctcttacacacattgacccctgtgttcataaattggccgagtaatacgaat----agagagagtctcaccacggattgtaggttgtgg 10304712  T
Q  398 tatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagt 497  Q
     | |||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10304713 cagattgccgtaggtagctttgccgtgcgatgcgacaagtgcttgtgcaaaggaccgcgacggtggttgtggtgctggaaccgccgttgtggagggcagt 10304812  T
Q  498 gccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa 579  Q
    |||||| |||||||||||||||||||||  ||||||| ||||||||| |||||||||||| | ||||||||| |||||||||    
T  10304813 gccatgagagatggtgcagctttggagggcgcagctgtcggcaataacaactctgcctgccaatcgaacggcctagcagaaa 10304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 10288604 - 10288956
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgcct-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||| |||    
T  10288604 ccaatattcttgtggcagtgccatcaatcggatccatacttgcgcatgtgtatttctctgattatgcatatcaatatccactgaccattcaaataatcgt 10288703  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  10288704 aacatccccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtggcaaaaaagaattcataaaagcccctacctaaagata 10288803  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcc--tttgttgagaaccaacctt 298  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||  |||||| ||||||||||||    
T  10288804 gcaacgtccaaggtgca-tagtattccattgttttcgaagcttgtcttcaatttcctttgacgcatagggtttatctcctttttgtttagaaccaacctt 10288902  T
Q  299 ccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta 352  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288903 ccacaaaggtttctcttacacacattgaccccctgttcataaattggctgagta 10288956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 20950929 - 20950591
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgccttg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| ||||||||||| ||||||||| | | | | || |||||||||| ||| |||||||| ||   || ||||||||| |||    
T  20950929 ccaatattcttgtggcagtgccatcaatcggatccatacttgcacatgggtgttcctctgattatacatatcaaaatcgacactccgttcaaataagcgt 20950830  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| |||  ||||| |  |  ||||||| |||||||||| |||||| |||||||||| |  |||||||||||| |||| | ||| | |||| |||||    
T  20950829 aaaacccccgatttcaaatctatcgttcccactgcccaaacagtttgcatatcagattcattagcaaaaaagaatttataataacccctgcctagagata 20950730  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    | ||||||||||| |||| ||||||||| ||||||  |||||||||  ||||||||||||| || |||||||| |||||||||||||||||||| |||||    
T  20950729 gtaacgtccaaggagcagtagtcttccactgtttcttaagcttgtccacaatttccttcgacgcgtagggtttgtctcctttgttgagaaccaatcttcc 20950630  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcata 339  Q
    ||| |  ||||||||||||||||||||||||| ||||||    
T  20950629 acggatatttctcttacacacattgacccccttttcata 20950591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 421 - 579
Target Start/End: Original strand, 10289007 - 10289165
Alignment:
Q  421 cgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagcttt 520  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10289007 cgtgcgatgcgacaagtgcttgtgcaagggaccgcggcggcggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagcttt 10289106  T
Q  521 ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa 579  Q
    |||||  ||| ||| ||||||||| |||||||||||| | ||||||||| |||||||||    
T  10289107 ggagggcgcaactgtcggcaataacaactctgcctgccaatcgaacggcttagcagaaa 10289165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 422 - 579
Target Start/End: Complemental strand, 20950512 - 20950355
Alignment:
Q  422 gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttg-tggacggcagtgccatgggagatggtgcagcttt 520  Q
    ||||||||| || || ||||| |||||||| |||||| ||||||| ||||||| |||||||| || |||| | ||  |||||||||||| | ||||||||    
T  20950512 gtgcgatgccaccagagcttgagcaaaggaacgcggctgtggttgaggtgctgaaaccgccgctgctgga-gtcaaagccatgggagattgcgcagcttt 20950414  T
Q  521 ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa 579  Q
    ||| | || |||||| |||||  | | |||||||||| | ||||| |||||||||||||    
T  20950413 ggatggtgtagctgctggcaaggagagctctgcctgccattcgaaaggcatagcagaaa 20950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 3 - 556
Target Start/End: Complemental strand, 9283259 - 9282713
Alignment:
Q  3 caatattattgtggcagtgcaatcaatcggatgcatacttgcgcctt-gtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgta 101  Q
    ||||||| |||||||||||| ||||||||||| |||||||| || |  || || || ||||||||||| | ||||||||| |||||||||||||||||||    
T  9283259 caatattgttgtggcagtgccatcaatcggatccatacttgtgcttgagtgttcctatgattatgcatattaaaatccaccgaccattcaaataaacgta 9283160  T
Q  102 acaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagatag 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||   | |||| |||||||||| |||||||||||| |||||||||||||    
T  9283159 acacccccggcttcaagttcacagttcccattgcccaaacaatttgcaaatca---ttagtggcaaaaaagaagtcataaaagcccctacctaaagatag 9283063  T
Q  202 caacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcca 301  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||  ||||||||| |||||||||||||||    
T  9283062 caacgtccaaggtgtagcagtcttccattgtttccgaagcttgtcctcaatttccttcgacgtatagggttta-atcctttgttaagaaccaaccttcca 9282964  T
Q  302 cgaaggtttctcttacacacattgaccccctgttcataaattggctgagtattaggaatnnnnnnnnnnnntctcaccctagattgtaggttgtggtata 401  Q
    | |||||||||||||||||||||||||||||||| ||| | || ||||| | || ||||             |||||    | |||||||||| || | |    
T  9282963 caaaggtttctcttacacacattgaccccctgttaatacactgactgagcagtacgaatggagagagc----ctcacaacgggttgtaggttgcggcaga 9282868  T
Q  402 ttgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgcca 501  Q
    || || || || |||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||| | ||||||||    
T  9282867 ttatcattagtggcttggctgtgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctgggaccgcagctgtggaagacagtgcca 9282768  T
Q  502 tgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctg 556  Q
    ||||||||||  || ||||||||| || ||||| ||||||||| |||||||||||    
T  9282767 tgggagatggcacaactttggagggtgtagctgtcggcaataacaactctgcctg 9282713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 38501315 - 38501666
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgccttg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||| ||| ||||||||||| ||||| ||||| | | | || |||||||||| ||| |||||||| || | |||||||||||| |||    
T  38501315 ccaatattcttgtggcaatgccatcaatcggatccatacctgcgcatgggtgttcctctgattatacatatcaaaatcgacagtccattcaaataagcgt 38501414  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| |||| ||||| || | |||||||| |||||||||| |||||| |||||||||| |  ||||||||||||| ||||| ||| |||||| |||||    
T  38501415 aaaacccccggtttcaaatttatagttcccactgcccaaacagtttgcatatcagattcattagcaaaaaagaattcgtaaaaacccctacctagagata 38501514  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    | ||||||||||| |||||||||||||| ||||||  ||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| |||||    
T  38501515 gtaacgtccaaggagcagcagtcttccactgtttcttaagcttgtcctcaatttccttcgacgcgtagggtttgtctcctttgttgagaaccaatcttcc 38501614  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcataaattggctgagta 352  Q
    ||  || ||||||||||||||||||||||||| |||||| | ||| ||||||    
T  38501615 acagagatttctcttacacacattgacccccttttcatacactggttgagta 38501666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 438 - 578
Target Start/End: Original strand, 38501748 - 38501888
Alignment:
Q  438 gcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccg 537  Q
    ||||| |||||||| |||||| ||||||| ||||||| || ||||| ||  || | ||| |||||||||||||| || |||||||| | || ||||||||    
T  38501748 gcttgagcaaaggaacgcggctgtggttgaggtgctgaaatcgccgctgctgaagtcagagccatgggagatggcgctgctttggatggtgtagctgccg 38501847  T
Q  538 gcaataataactctgcctgctagtcgaacggcatagcagaa 578  Q
    ||||  | | |||||||||| ||||||| ||||||||||||    
T  38501848 gcaaagagagctctgcctgccagtcgaaaggcatagcagaa 38501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 46671 - 47022
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgcct-tgtatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| || | |||||| ||||||||||| | ||| |||||||| |||||||| ||||||||| | | |||||||||||  |||    
T  46671 ccaatattcttgtggcagtgccataagtcggatccatacttgcgcatgtgtgtttctctggttatgcatatcaaaatccgcagtccattcaaatagtcgt 46770  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| ||||||||||||| | ||||||||||||||||||| |||||| |||||||||| || |||||||||||||||| |||||| |||||| ||| |    
T  46771 aaaacccccggcttcaagtttaaagttcccattgcccaaacattttgcatatcagattcattggcaaaaaagaattcatagaagcccctacctagagaaa 46870  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    |||| |  |||| ||||| ||||||||||||||| | ||||||||| |  ||||||||||| ||||| || || ||||||||| |||| |||||||||||    
T  46871 gcaatgatcaagctgcagtagtcttccattgttttctaagcttgtccttgatttccttcgatgcatacggcttgtctcctttgctgaggaccaaccttcc 46970  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcataaattggctgagta 352  Q
    |||||||||| ||||||| |  |||||||||| |||||| | ||||||||||    
T  46971 acgaaggtttatcttacagaagttgacccccttttcatacaatggctgagta 47022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 4847 - 5193
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgccttg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| |||||| |||| |||||||| || | | | || |||||||||| ||| |||||     | | |||||||||||| |||    
T  4847 ccaatattcttgtggcagtgccatcaattggatccatacttgtgcatgggtgttcctctgattatacatatcaaa-----cagtccattcaaataagcgt 4941  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| |||| ||||| || |  ||||||| ||||||||||||||||| || ||||||| |  ||||||||||||| ||| | ||| |||||| |||||    
T  4942 aaaacccccggtttcaaatttatcgttcccactgcccaaacaatttgcatataagattcattagcaaaaaagaattcgtaataacccctacctagagata 5041  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgttgagaaccaaccttcc 300  Q
    | ||||||||||| ||| |||||||||| ||||||  ||||||||| |||||||||||||| || |||||||| ||||||||||||| |||||| |||||    
T  5042 gtaacgtccaaggagcaacagtcttccactgtttcttaagcttgtcctcaatttccttcgacgcgtagggtttgtctcctttgttgacaaccaatcttcc 5141  T
Q  301 acgaaggtttctcttacacacattgaccccctgttcataaattggctgagta 352  Q
    ||| || ||||||||||||||| ||||||||| |||||| |  |||||||||    
T  5142 acggagatttctcttacacacactgacccccttttcatacaccggctgagta 5193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 579
Target Start/End: Original strand, 5332 - 5413
Alignment:
Q  498 gccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa 579  Q
    |||||||||||||| ||| ||||||| | || ||||||||||||  | | |||||| ||| ||||||| |||||||||||||    
T  5332 gccatgggagatggcgcaactttggatggtgtagctgccggcaaagagagctctgcttgccagtcgaaaggcatagcagaaa 5413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 20380948 - 20380704
Alignment:
Q  2 ccaatattattgtggcagtgcaatcaatcggatgcatacttgcgccttg-tatttctctgattatgcatttcaaaatccactgaccattcaaataaacgt 100  Q
    |||||||| |||||||||||| ||||||||||| ||||| ||||| | | | || |||||||||| ||| |||||||| || | |||||||||||| |||    
T  20380948 ccaatattcttgtggcagtgccatcaatcggatccatacctgcgcatgggtgttcctctgattatacatatcaaaatcgacagtccattcaaataagcgt 20380849  T
Q  101 aacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaagcccttacctaaagata 200  Q
    || ||| |||| ||||| || |  ||||||| |||||||| | |||||| |||||||||| |  ||||||||||||| ||||| ||| |||||| |||||    
T  20380848 aaaacccccggtttcaaatttatcgttcccactgcccaaatagtttgcatatcagattcattagcaaaaaagaattcgtaaaaacccctacctagagata 20380749  T
Q  201 gcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgt 245  Q
    | ||||||||||| |||||||||||||||||||||  ||||||||    
T  20380748 gtaacgtccaaggagcagcagtcttccattgtttcttaagcttgt 20380704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 318
Target Start/End: Original strand, 13581833 - 13582066
Alignment:
Q  85 ccattcaaataaacgtaacaccgccggcttcaagttcacagttcccattgcccaaacaatttgcaaatcagattcagtgacaaaaaagaattcataaaag 184  Q
    |||||||||||||||||| | | |||| ||||| || |  |||||||| ||||||||   ||| |||||||||||      ||||||||||||||||||     
T  13581833 ccattcaaataaacgtaatagccccggtttcaaatttaatgttcccatcgcccaaaccgcttgtaaatcagattctaaattaaaaaagaattcataaaaa 13581932  T
Q  185 cccttacctaaagatagcaacgtccaaggtgcagcagtcttccattgtttccgaagcttgtcttcaatttccttcgaagcatagggtttatctcctttgt 284  Q
    ||| |||||| ||||  ||| ||||| |||||||| |||||||| |||||| | |  ||  |||||||||| || || |  || ||||||||||||||||    
T  13581933 cccctacctagagatgacaaagtccatggtgcagcggtcttccaatgtttctgtaatttcgcttcaatttcttttgatgtgtacggtttatctcctttgt 13582032  T
Q  285 tgagaaccaaccttccacgaaggtttctcttaca 318  Q
    | || || |||||||| |||||||||||||||||    
T  13582033 taagtacaaaccttcctcgaaggtttctcttaca 13582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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