View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_27 (Length: 331)
Name: NF7580_high_27
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 33749449 - 33749370
Alignment:
| Q |
246 |
tgtaaacgaaatggacgaagtagatctataacaacacaagaaagaatcaaaccatttattattttgttttttcttctcac |
325 |
Q |
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| T |
33749449 |
tgtaaacgaaatggacgaagtagatctataacaacacaagaaagaatcaagccatttcttattttgttttttcttttcac |
33749370 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 33749635 - 33749567
Alignment:
| Q |
133 |
cactctctcacatattggaccacgtggccaacaactc--tctcacacatggataaccggttgaataggt |
199 |
Q |
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| T |
33749635 |
cactctctcacatattggaccacgtggccaacaactctctctcacacatgggtaattggttgaataggt |
33749567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 33749692 - 33749648
Alignment:
| Q |
19 |
cattcgttggtgggatcttcttgtcttcttgttcttgctactctc |
63 |
Q |
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| T |
33749692 |
cattcgttggtgggatcttcttgtcttcttgttcttgctactctc |
33749648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 33748830 - 33748876
Alignment:
| Q |
114 |
ttttgcactctccattatacactctctcacatattggaccacgtggc |
160 |
Q |
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| T |
33748830 |
ttttacactctctattagacactctctcacatattggaccacgtggc |
33748876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 538211 - 538133
Alignment:
| Q |
101 |
taaggacaatcatttttgcactctccattatacactctctcacatattggaccacgtggccaacaactctctcacacat |
179 |
Q |
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| T |
538211 |
taaggacagtcacttttacactctccattagacactctctcacatacagggccatgtggcccacaacactctctcacat |
538133 |
T |
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