View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_high_29 (Length: 328)

Name: NF7580_high_29
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_high_29
NF7580_high_29
[»] chr7 (1 HSPs)
chr7 (26-314)||(21873351-21873644)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 314
Target Start/End: Original strand, 21873351 - 21873644
Alignment:
Q  26 tattgtcttatagggttgactcttcctccttggggattaattgaatcgagatgatttccttgttgactccatatacttctttttatcagttatgttgtat 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21873351 tattgtcttataggggtgactcttcctccttggggattaattgaatcgagaggatttccttgttgactccatatacttctttttatcagttatgttgtat 21873450  T
Q  126 cgtgtacatgagatttatagaaac-cccgtattttgacttgtaaactctccacggactttgaccgtttcattggtggatctttcaatgtatccacatagt 224  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21873451 cgtgtacatgagatttatagaaacaccagtattttgacttgtaaactcttcacggacttcgaccgtttcattggtggatctttcaatgtatccacatagt 21873550  T
Q  225 gtttccttttttccatggactata----cgagggagaccaatgatttgtgatacttcattgtgttgtcgttgtcatgatatgattgcaagaaat 314  Q
    ||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21873551 gtttccttttttccatggactataataccgagggagaccaatgatctgtgatacttcattgtgttgtcgttgtaatgatatgattgcaagaaat 21873644  T

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