View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_36 (Length: 288)
Name: NF7580_high_36
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 48303424 - 48303167
Alignment:
| Q |
14 |
caaacataaaatctctaccaaaacaacaacaacaatggatttcaggttgatgggtttggattcaccactcttcaacaccctccaccacataatggacctc |
113 |
Q |
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| T |
48303424 |
caaacataaaatctctaccaaaacaacaacaacaatggatttcaggttgatgggtttggattcaccactcttcaacaccatccaccacataatggacctc |
48303325 |
T |
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| Q |
114 |
acagacgacacaacagagaagaatctaaacgcaccaacacgaacctacgttcgcgacgcaaaagcaatggctgcaacaccagcagacgtgaaagagtatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48303324 |
acagacgacacaacagagaagaatctaaacgcaccaacacgaacctacgttcgcgacgcaaaagcaatggctgcaacaccagcagacgtgaaagagtatc |
48303225 |
T |
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| Q |
214 |
caaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48303224 |
caaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggt |
48303167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 10462138 - 10462214
Alignment:
| Q |
195 |
gcagacgtgaaagagtatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggt |
271 |
Q |
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| T |
10462138 |
gcagacgtgaaggaataccaaaactcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggt |
10462214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 3745018 - 3744978
Alignment:
| Q |
219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctgg |
259 |
Q |
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| T |
3745018 |
tcatacgtgttcgtgattgacatgccaggattgaaatctgg |
3744978 |
T |
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