View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_39 (Length: 276)
Name: NF7580_high_39
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 12961483 - 12961300
Alignment:
| Q |
9 |
gaagaatatgggctgggaagaagaaagttcatcatcgtcatcatctagggattgaagattcaatagggttttaattttgatgtaatgttttcttcttgta |
108 |
Q |
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| T |
12961483 |
gaagaacatgggctgggaagaagaaagttcatcatcgccatcatctagggattgaagattcaatagggttttaattttgatgtaatgttttcttcttgta |
12961384 |
T |
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| Q |
109 |
tacacttattgcataagtaaatcaatatctcaattccatttgaaattagtgttacatgtacccattgcaaagacacttggagaa |
192 |
Q |
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| T |
12961383 |
tacacttattgcataagcaaatcaatatctcaattccatttgaaattagaggtacatgtacccatagcaaatacacttggagaa |
12961300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 12960892 - 12960822
Alignment:
| Q |
191 |
aaggccatactctaacacttataaccccaactgggaagaacatccaaatttctcatggagaagaaagaatt |
261 |
Q |
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| T |
12960892 |
aaggccatactctaacactaataaccccaactgggaagaacatccaaatttctcatggagaagaaataatt |
12960822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 24801188 - 24801082
Alignment:
| Q |
46 |
tcatcatctagggattgaagattcaatagggttttaattttgatgtaatgttttcttcttgtatacacttattgcataagtaaatcaatatctcaattcc |
145 |
Q |
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| T |
24801188 |
tcatcatcaaagtattgaagtttcaattgggtttgatttttggtgta-tattttcttcttgtaaacaatt-ttgcaaaag-aaatctatatctcaattcc |
24801092 |
T |
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| Q |
146 |
atttgaaatt |
155 |
Q |
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|||| ||||| |
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| T |
24801091 |
atttaaaatt |
24801082 |
T |
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