View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_high_43 (Length: 267)

Name: NF7580_high_43
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_high_43
NF7580_high_43
[»] chr8 (6 HSPs)
chr8 (17-255)||(14082560-14082798)
chr8 (186-248)||(14654211-14654273)
chr8 (175-255)||(24909082-24909164)
chr8 (175-255)||(24911303-24911385)
chr8 (182-245)||(15927243-15927304)
chr8 (197-236)||(20991591-20991630)
[»] chr7 (11 HSPs)
chr7 (175-255)||(27400674-27400754)
chr7 (174-255)||(778940-779021)
chr7 (175-255)||(783758-783842)
chr7 (182-249)||(2458490-2458555)
chr7 (177-245)||(18730890-18730957)
chr7 (182-249)||(9696281-9696346)
chr7 (175-249)||(3549887-3549959)
chr7 (182-249)||(4786701-4786766)
chr7 (178-245)||(15325061-15325126)
chr7 (182-249)||(4819745-4819810)
chr7 (175-249)||(720001-720073)
[»] chr4 (10 HSPs)
chr4 (175-255)||(24251849-24251929)
chr4 (175-255)||(32113060-32113140)
chr4 (175-244)||(9161191-9161260)
chr4 (169-247)||(31813427-31813506)
chr4 (175-255)||(31816413-31816493)
chr4 (182-249)||(13562658-13562723)
chr4 (175-245)||(10235978-10236046)
chr4 (175-249)||(16434383-16434456)
chr4 (175-249)||(38159576-38159648)
chr4 (175-255)||(16944661-16944741)
[»] scaffold0010 (1 HSPs)
scaffold0010 (175-255)||(123346-123426)
[»] chr6 (8 HSPs)
chr6 (175-255)||(12697192-12697272)
chr6 (184-255)||(17190461-17190532)
chr6 (175-255)||(9375499-9375579)
chr6 (182-249)||(12128914-12128978)
chr6 (178-242)||(3121241-3121304)
chr6 (175-227)||(6735080-6735132)
chr6 (182-249)||(7433466-7433530)
chr6 (211-249)||(15100812-15100850)
[»] chr5 (4 HSPs)
chr5 (175-255)||(21374620-21374700)
chr5 (182-249)||(20817659-20817724)
chr5 (182-249)||(23421480-23421545)
chr5 (182-245)||(42193248-42193309)
[»] chr1 (7 HSPs)
chr1 (181-237)||(31160554-31160610)
chr1 (175-249)||(18620467-18620539)
chr1 (175-249)||(5505626-5505697)
chr1 (175-220)||(19453851-19453896)
chr1 (182-247)||(20981735-20981798)
chr1 (182-247)||(43761141-43761204)
chr1 (198-246)||(6142143-6142191)
[»] chr3 (5 HSPs)
chr3 (175-249)||(41219843-41219915)
chr3 (175-248)||(20097901-20097973)
chr3 (175-247)||(26141015-26141086)
chr3 (182-249)||(10496823-10496888)
chr3 (200-249)||(51199332-51199380)
[»] chr2 (5 HSPs)
chr2 (178-247)||(25849091-25849160)
chr2 (175-249)||(30558336-30558408)
chr2 (175-211)||(19937444-19937480)
chr2 (182-247)||(19877635-19877698)
chr2 (174-211)||(34314923-34314960)
[»] scaffold0009 (1 HSPs)
scaffold0009 (182-247)||(72060-72123)
[»] scaffold0182 (1 HSPs)
scaffold0182 (182-249)||(31298-31365)
[»] scaffold0015 (1 HSPs)
scaffold0015 (175-213)||(80884-80922)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 14082560 - 14082798
Alignment:
Q  17 acaaagaagttatatacaaaaaggtatttgatttacatgttgatttttaattgatttcgatggttatgaattatattgtgatttcaatattgaatttgaa 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14082560 acaaagaagttatattcaaaaaggtatttgatttacatgttgatttttaattgatttcgatgggtatgaattatattgtgatttcaatattgaatttgaa 14082659  T
Q  117 gtttggttaagagtatgaaatttcattaatcatcactaaagggtggtatttacaaccatacttgcaaaagtacaataatcgatattagggtttagtattg 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082660 gtttggttaagaatatgaaatttcattaatcatcactaaagggtggtatttacaaccatacttgcaaaagtacaataatcgatattagggtttagtattg 14082759  T
Q  217 tattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||| | ||||||||| | ||||||||||||||    
T  14082760 tattggtcattccttgagaaggttttcaagggtgatatt 14082798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 14654211 - 14654273
Alignment:
Q  186 gtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaaggg 248  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||    
T  14654211 gtacaataatcgatattagggtttagtatcgtattggtcatgccatgagaaggctttcaaggg 14654273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 24909082 - 24909164
Alignment:
Q  175 tacttgcaaaagtacaataatcgatatta--gggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||||||||||||| ||||||  ||||||| |||| ||||| |||||| ||||||||||| | ||||||| ||||    
T  24909082 tacttgcaaaagtacaataatcaatattatagggtttaatattttattgatcatgccttgagaaggctttaaagggtggtatt 24909164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 24911303 - 24911385
Alignment:
Q  175 tacttgcaaaagtacaataatcgatatta--gggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||||||||||||| ||||||  ||||||| |||| ||||| |||||| ||||||||||| | ||||||| ||||    
T  24911303 tacttgcaaaagtacaataatcaatattatagggtttaatattttattgatcatgccttgagaaggctttaaagggtggtatt 24911385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 15927304 - 15927243
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaa 245  Q
    |||||||||||||||| |||||||| || |||||||||| ||||||| ||||||||||||||||    
T  15927304 aaaagtacaataatcg-tattagggctt-gtattgtattagtcatgccttgagaaggctctcaa 15927243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 20991630 - 20991591
Alignment:
Q  197 gatattagggtttagtattgtattggtcatgctttgagaa 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20991630 gatattagggtttagtattgtattggtcatgccttgagaa 20991591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 27400754 - 27400674
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27400754 tacttgcaaaagtacaataatcgatattagggttcagtattgtattggtcatgccttgagaaggctctcaagggtgatatt 27400674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 778940 - 779021
Alignment:
Q  174 atacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||| ||||    
T  778940 atacttgcaaaagaacaataatcgatattagggtttcatattgtattggtcatgcctttagaaggctctcaagggtggtatt 779021  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 783758 - 783842
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattag----ggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||||||||||||||| |||     |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  783758 tacttgcaaaagtacaataatcgatgttatatatggtttagtattgtattggtcatgccttgagaaggctctcaagggtggtatt 783842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 2458490 - 2458555
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  2458490 aaaagtacaataatcg-tattagggttt-gtattgtattggtcatgccttgagaaggctctcaagggt 2458555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 18730957 - 18730890
Alignment:
Q  177 cttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaa 245  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  18730957 cttgcaaaagtacaataatcg-tattagggttttgtattgtattgatcatgccttgagaatgctctcaa 18730890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 9696281 - 9696346
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  9696281 aaaagtacaataatcg-tattagggttt-gtattgtattggtcatgctttaagaaggttctcaagggt 9696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 3549887 - 3549959
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||  |||||||| |||||||||||    
T  3549887 tacttgcaaaagtacaataatcg-tattatggttt-gtgttgtattggtcatgtcttgagaagactctcaagggt 3549959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 4786701 - 4786766
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||  |||||| |||||||||||||    
T  4786701 aaaagtacaataatcg-tattagagttt-gtattgtattggtcatgtcttgagagggctctcaagggt 4786766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 15325061 - 15325126
Alignment:
Q  178 ttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaa 245  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||| |||||||    
T  15325061 ttgcaaaagtacaataatcg-tattagggtct-gtattgtattggtcatggtttgaaaagactctcaa 15325126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 4819745 - 4819810
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||  || ||| |||||||||||||    
T  4819745 aaaagtacaataatcg-tattagagttt-gtattgtattggtcatgtctttagagggctctcaagggt 4819810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 720073 - 720001
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||||| |||||||||  | |||||||||| ||||||| ||||| |||| |||||||| |||||||||||    
T  720073 tacttgcaaaaatacaataatgta-attagggttt-gtattgtgttggtaatgccttgagaagactctcaagggt 720001  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 24251849 - 24251929
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24251849 tacttgcaaaagtacaacaatcgatattagggtttagtattgtattggtcatgccttgagaaggctctcaagggtggtatt 24251929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 32113140 - 32113060
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  32113140 tacttgcaaaagtacaataatcgatattaaggtttagtattgtattggtcatgccttgagaaggctctcaatggtggtatt 32113060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 9161260 - 9161191
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctca 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  9161260 tacttgcaaaagtacaataatcgatattagggtttagtattgtattagtcatgccttgagaagactctca 9161191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 31813506 - 31813427
Alignment:
Q  169 caaccatacttgcaaaa-gtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    |||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||| | ||||||||||||||||    
T  31813506 caactatacttgcaaaaagtacaataattgatattaggctttagtattgtattggttatgcctcgagaaggctctcaagg 31813427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 31816493 - 31816413
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||||||||||  |||||| || |||||||||||||||||||||| | |||||  |||||||||||| ||||    
T  31816493 tacttgcaaaagtacaataactgatattgggctttagtattgtattggtcatgcctcgagaacactctcaagggtggtatt 31816413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 13562658 - 13562723
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  13562658 aaaagtacaataatcg-tattagggttt-gtattgtattggtcatgctttaagaaggttctcaagggt 13562723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 10236046 - 10235978
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaa 245  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||    
T  10236046 tacttgcaaaagtacaataatcg-tattagggttt-gtaatgtattggtcatgccttcagaaggctctcaa 10235978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 16434456 - 16434383
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||||||||||||||||   |||||| || ||||||||||||||||| | ||||||||| ||||||||||    
T  16434456 tacttgcaaaagtacaataatcttaattaggatt-agtattgtattggtcattccttgagaaggttctcaagggt 16434383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 38159648 - 38159576
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||| ||||||||||| | |||||||||||| |||||||| |||||||| ||||||||||||| ||||||    
T  38159648 tacttgcaatagtacaataattg-tattagggttta-tattgtatcggtcatgccttgagaaggctcttaagggt 38159576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 16944741 - 16944661
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||  ||||||||||||||||||||| ||||||| || |||| || |||  ||||||| ||||||||||||| ||||    
T  16944741 tacttgctgaagtacaataatcgatattagagtttagtcttatattagttatgtcttgagaaagctctcaagggtggtatt 16944661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 123346 - 123426
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||    
T  123346 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgccttgagaatgctctcaaaggtggtatt 123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 12697192 - 12697272
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||  |||||||||||||||||||| ||||    
T  12697192 tacttgcaaaagtacaataattgatattagggtttagtcatgtattggtcatgccctgagaaggctctcaagggtggtatt 12697272  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 17190532 - 17190461
Alignment:
Q  184 aagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  17190532 aagtacaataattgatattagggtttagtattgtattggtcatgccttgagaatgctcttaaggatgatatt 17190461  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 9375499 - 9375579
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||| ||||||||||||| ||||||| |||||| ||  |||||||||||  ||||||||||||||||||||| ||||    
T  9375499 tacttgcagaagtacaataatcaatattagcgtttagcatcatattggtcatgtcttgagaaggctctcaagggtggtatt 9375579  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 12128978 - 12128914
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  12128978 aaaagtacaataatcg-tattagggttt-gtattgtattgctcatgctt-gagaaggctctcaagggt 12128914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 3121304 - 3121241
Alignment:
Q  178 ttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctct 242  Q
    ||||||||||| |||||||| ||| || ||||||||||||||||||||||| ||||||| |||||    
T  3121304 ttgcaaaagtataataatcg-tataagagtttagtattgtattggtcatgccttgagaatgctct 3121241  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 6735080 - 6735132
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatg 227  Q
    |||||||||||||| ||||||||  |||||||||| ||| |||||||||||||    
T  6735080 tacttgcaaaagtataataatcgtgattagggttttgtaatgtattggtcatg 6735132  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 7433530 - 7433466
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||| |||||||  |||||||||||    
T  7433530 aaaagtacaataatcg-tattagagttt-gtattgtattggtcatgccttgagaa-actctcaagggt 7433466  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 15100812 - 15100850
Alignment:
Q  211 gtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  15100812 gtattgtattagtcatgctttgagaaggttctcaagggt 15100850  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 21374620 - 21374700
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggtgatatt 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||| || | |||||||    
T  21374620 tacttgcaaaagtacaataatcgatattagagtttagtattgtatttgtcatgcattgagaagactctaaaagatgatatt 21374700  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 20817724 - 20817659
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  20817724 aaaagtacaataatcg-tattagggttt-gtattgtattggtcatgccttgagaatgctctcaagggt 20817659  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 23421545 - 23421480
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||||| ||||| |||||  | ||||||||||||||| ||||||| ||||||||||||    
T  23421545 aaaagtacaataatcg-tattatggtttctt-ttgtattggtcatgccttgagaatgctctcaagggt 23421480  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 42193309 - 42193248
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaa 245  Q
    |||||||||||||||| |||||| |||| |||| ||||||||||||| |||||||| |||||||    
T  42193309 aaaagtacaataatcg-tattagagttt-gtatcgtattggtcatgccttgagaagactctcaa 42193248  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 31160610 - 31160554
Alignment:
Q  181 caaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaag 237  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31160610 caaaagtacaataattgatattagggtttagtattgtattggtcatgccttgagaag 31160554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 18620467 - 18620539
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||| ||||||| ||||||||||||    
T  18620467 tacttgcaaaagtataataatcg-tattagggttt-gtattgtgttggtcatgccttgagaaagctctcaagggt 18620539  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 5505697 - 5505626
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||| || ||| ||||||||||||||||||||    
T  5505697 tacttgcaaaagtacaataatcg-tattagggttt-ctattgtattgttc-tgccttgagaaggctctcaagggt 5505626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 19453851 - 19453896
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtatt 220  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||    
T  19453851 tacttgcaaaagtacaataatagatattcgggtttagtaatgtatt 19453896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 20981735 - 20981798
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    |||||||||||||||| ||||||||||| ||||  |||| ||||||| ||||| ||||||||||||    
T  20981735 aaaagtacaataatcg-tattagggttt-gtatcctattagtcatgccttgagtaggctctcaagg 20981798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 43761204 - 43761141
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    ||||||||||||||||  |||||||||| |||| ||||||||||| | ||||||| ||||||||||    
T  43761204 aaaagtacaataatcgg-attagggttt-gtatcgtattggtcataccttgagaaagctctcaagg 43761141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 6142143 - 6142191
Alignment:
Q  198 atattagggtttagtattgtattggtcatgctttgagaaggctctcaag 246  Q
    |||||| ||||||||| | |||||||  |||||||||||||||||||||    
T  6142143 atattaaggtttagtactatattggttctgctttgagaaggctctcaag 6142191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 41219843 - 41219915
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  41219843 tacttgcacaagtacaataatc-atattagggttt-gtattgtattggtcatgccttgagaagactctcaagggt 41219915  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 20097901 - 20097973
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaaggg 248  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||| | ||||||||||| |||||||    
T  20097901 tacttgcaaaagtacaataatcgtaattagggttta-tattgtattggtcattccttgagaaggctatcaaggg 20097973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 26141086 - 26141015
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    |||||||||||||||||||||    |||||||||| |||| ||||||||||||| | ||||||||||||||||    
T  26141086 tacttgcaaaagtacaataattataattagggttt-gtatcgtattggtcatgcctcgagaaggctctcaagg 26141015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 10496888 - 10496823
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||| ||||||  ||||||||||||    
T  10496888 aaaagtacaataattg-tattagggttt-gtattgtattggtcatgccttgagagtgctctcaagggt 10496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 51199380 - 51199332
Alignment:
Q  200 attagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    |||||||||| |||||||||| ||||||| |||||||| |||||||||||    
T  51199380 attagggttt-gtattgtattcgtcatgccttgagaagactctcaagggt 51199332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 25849091 - 25849160
Alignment:
Q  178 ttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    ||||| |||||||||||| ||||||||||||| |||||| ||||||||||  || |||||||||||||||    
T  25849091 ttgcataagtacaataattgatattagggtttggtattgcattggtcatggcttaagaaggctctcaagg 25849160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 30558336 - 30558408
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||| ||| ||||||||||| |||||||| || ||||||||||| |||||| ||||||||||||| ||||||    
T  30558336 tacttgctaaattacaataatcg-tattagggctt-gtattgtattgatcatgccttgagaaggctcttaagggt 30558408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 19937444 - 19937480
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttag 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19937444 tacttgcaaaagtacaataatcaatattagggtttag 19937480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 19877698 - 19877635
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    ||||||||||| |||| ||||||||||| ||||||||||| || ||  ||||||||||||||||||    
T  19877698 aaaagtacaattatcg-tattagggttt-gtattgtattgctcgtgtcttgagaaggctctcaagg 19877635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 34314923 - 34314960
Alignment:
Q  174 atacttgcaaaagtacaataatcgatattagggtttag 211  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  34314923 atacttgcaaaaatacaataatcaatattagggtttag 34314960  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 72060 - 72123
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagg 247  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| || |||||||| || ||||||    
T  72060 aaaagtacaataatcg-tattagggttt-gtattgtattggtcaagccttgagaagactgtcaagg 72123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 31365 - 31298
Alignment:
Q  182 aaaagtacaataatcgatattagggtttagtattgtattggtcatgctttgagaaggctctcaagggt 249  Q
    ||||||||| ||||||  |||||| ||||| ||||||||||| |||| | ||||||||||| ||||||    
T  31365 aaaagtacactaatcgtaattaggatttagcattgtattggttatgcctcgagaaggctctgaagggt 31298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 80884 - 80922
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagta 213  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  80884 tacttgcaggagtacaataatcgatattagggtttagta 80922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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