View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7580_high_46 (Length: 251)
Name: NF7580_high_46
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 44782358 - 44782578
Alignment:
| Q |
12 |
aacctgtgttgagatataaaagtagaaacgtgtgttcgatttgttatactctcccatttaaaactattaaacaagatagtatataatatctacacaacta |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44782358 |
aacctatgttgagatataaaagtagaaacgtgtgttcgatttgttatactctcccatttaaaactattaaacaaga---tatataatatctacacaacta |
44782454 |
T |
|
| Q |
112 |
aaattagaatgtaaaatagcatatagataaccnnnnnnngagagggaattgaactataatgattaggccttatattact-aatggagacacatatcagtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44782455 |
aaattagaatgtaaaatagcatatagataaccaaaaaaagagagggaattgaactataatgattaggccttatattactaaatggagacacatatcagtg |
44782554 |
T |
|
| Q |
211 |
atcgtggatgttatgccaactaac |
234 |
Q |
| |
|
||| ||||| |||||||||||||| |
|
|
| T |
44782555 |
atcatggatcttatgccaactaac |
44782578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University