View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_56 (Length: 235)
Name: NF7580_high_56
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 2462730 - 2462594
Alignment:
| Q |
71 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462730 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2462631 |
T |
|
| Q |
171 |
acacgttgtgagtttctccaaacaacctgagtataat |
207 |
Q |
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| T |
2462630 |
acacgttgtgagtttctccaaacaacctgggtataat |
2462594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 3063274 - 3063403
Alignment:
| Q |
78 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
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| Q |
178 |
gtgagtttctccaaacaacctgagtataat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataat |
3063403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 2466775 - 2466642
Alignment:
| Q |
71 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
170 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466775 |
cacttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2466679 |
T |
|
| Q |
171 |
acacgttgtgagtttctccaaacaacctgagtataat |
207 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
2466678 |
acacgttgtgagtttctccaaacaacctgggtataat |
2466642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 2458154 - 2458018
Alignment:
| Q |
68 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat |
167 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||| |
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| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat |
2458058 |
T |
|
| Q |
168 |
ccaacacgttgtgagtttctccaaacaacctgagtataat |
207 |
Q |
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|||| ||| | || ||||||||||||||||||||| |||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaat |
2458018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
| Q |
71 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
170 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca |
2470004 |
T |
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| Q |
171 |
acacgttgtgagtttctccaaacaacctgagt |
202 |
Q |
| |
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| ||||||| |||||||||||| |||||||| |
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| T |
2470003 |
atccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 2474368 - 2474238
Alignment:
| Q |
74 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca |
173 |
Q |
| |
|
||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| | |
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| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata |
2474272 |
T |
|
| Q |
174 |
cgttgtgagtttctccaaacaacctgagtataat |
207 |
Q |
| |
|
|||| || |||||||||||| ||||||||||||| |
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| T |
2474271 |
cgttttgtgtttctccaaaccacctgagtataat |
2474238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
105 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga |
181 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 2486576 - 2486512
Alignment:
| Q |
143 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
207 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat |
2486512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 18016046 - 18015917
Alignment:
| Q |
78 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
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| Q |
178 |
gtgagtttctccaaacaacctgagtataat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
18015946 |
gtgagtttctccaaacaacctgagtataat |
18015917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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