View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_high_57 (Length: 233)

Name: NF7580_high_57
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_high_57
NF7580_high_57
[»] chr8 (2 HSPs)
chr8 (17-214)||(14082560-14082757)
chr8 (186-214)||(14654211-14654239)
[»] scaffold0010 (1 HSPs)
scaffold0010 (175-214)||(123346-123385)
[»] chr4 (3 HSPs)
chr4 (175-214)||(9161221-9161260)
chr4 (175-214)||(24251849-24251888)
chr4 (175-214)||(32113101-32113140)
[»] chr7 (2 HSPs)
chr7 (175-214)||(27400715-27400754)
chr7 (174-209)||(778940-778975)
[»] chr5 (1 HSPs)
chr5 (175-214)||(21374620-21374659)
[»] chr6 (1 HSPs)
chr6 (175-212)||(12697192-12697229)
[»] chr2 (2 HSPs)
chr2 (175-211)||(19937444-19937480)
chr2 (174-211)||(34314923-34314960)
[»] scaffold0015 (1 HSPs)
scaffold0015 (175-213)||(80884-80922)
[»] chr1 (2 HSPs)
chr1 (175-213)||(19453851-19453889)
chr1 (181-214)||(31160577-31160610)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 14082560 - 14082757
Alignment:
Q  17 acaaagaagttatatacaaaaaggtatttgatttacatgttgatttttaattgatttcgatggttatgaattatattgtgatttcaatattgaatttgaa 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14082560 acaaagaagttatattcaaaaaggtatttgatttacatgttgatttttaattgatttcgatgggtatgaattatattgtgatttcaatattgaatttgaa 14082659  T
Q  117 gtttggttaagagtatgaaatttcattaatcatcactaaagggtggtatttacaaccatacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082660 gtttggttaagaatatgaaatttcattaatcatcactaaagggtggtatttacaaccatacttgcaaaagtacaataatcgatattagggtttagtat 14082757  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 14654211 - 14654239
Alignment:
Q  186 gtacaataatcgatattagggtttagtat 214  Q
    |||||||||||||||||||||||||||||    
T  14654211 gtacaataatcgatattagggtttagtat 14654239  T

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Target: scaffold0010 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 123346 - 123385
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  123346 tacttgcaaaagtacaataatcgatattagggtttagtat 123385  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 9161260 - 9161221
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9161260 tacttgcaaaagtacaataatcgatattagggtttagtat 9161221  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 24251849 - 24251888
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24251849 tacttgcaaaagtacaacaatcgatattagggtttagtat 24251888  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 32113140 - 32113101
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  32113140 tacttgcaaaagtacaataatcgatattaaggtttagtat 32113101  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 27400754 - 27400715
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  27400754 tacttgcaaaagtacaataatcgatattagggttcagtat 27400715  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 778940 - 778975
Alignment:
Q  174 atacttgcaaaagtacaataatcgatattagggttt 209  Q
    ||||||||||||| ||||||||||||||||||||||    
T  778940 atacttgcaaaagaacaataatcgatattagggttt 778975  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 21374620 - 21374659
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagtat 214  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  21374620 tacttgcaaaagtacaataatcgatattagagtttagtat 21374659  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 12697192 - 12697229
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagt 212  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12697192 tacttgcaaaagtacaataattgatattagggtttagt 12697229  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 19937444 - 19937480
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttag 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19937444 tacttgcaaaagtacaataatcaatattagggtttag 19937480  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 34314923 - 34314960
Alignment:
Q  174 atacttgcaaaagtacaataatcgatattagggtttag 211  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  34314923 atacttgcaaaaatacaataatcaatattagggtttag 34314960  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 80884 - 80922
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagta 213  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  80884 tacttgcaggagtacaataatcgatattagggtttagta 80922  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 19453851 - 19453889
Alignment:
Q  175 tacttgcaaaagtacaataatcgatattagggtttagta 213  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  19453851 tacttgcaaaagtacaataatagatattcgggtttagta 19453889  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 31160610 - 31160577
Alignment:
Q  181 caaaagtacaataatcgatattagggtttagtat 214  Q
    ||||||||||||||| ||||||||||||||||||    
T  31160610 caaaagtacaataattgatattagggtttagtat 31160577  T

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