View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_7 (Length: 600)
Name: NF7580_high_7
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 37834449 - 37835015
Alignment:
| Q |
18 |
tcataacttgcagcagtattgtccaagatatgttgccatgatgaataatagccaaggagttttgacggttcacatgccgatccaacattattaatgtgtc |
117 |
Q |
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| T |
37834449 |
tcataacttgcagcagtattgtccaagatatgttgccatgatgaataatagccaaggagttttgacggttcacatgccgatccaacattattaatgtgtc |
37834548 |
T |
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| Q |
118 |
tggtttcattagcttgactgagtgggatataatctacctgacgaaagacaggcaacctttcttgatcatctatcacaattccaattttacaattagtatg |
217 |
Q |
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| T |
37834549 |
tggtttcattagcttgactgagtgggatataatctacctgacgaaagacaggcaacctttcttgatcatctatcacaattccaattttacaattagtatg |
37834648 |
T |
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| Q |
218 |
acatgttaggtaagatcttgcctgaattaaatataaaatgacgttttaactttgctgcattattagcgcataatttcgttacagtatcatccaatcatgc |
317 |
Q |
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| T |
37834649 |
acatgttaggtaagatcttgcctgaattaaatataaaatgacgttttaactttgctgcattattagcgcataatttcgttacagtatcatccaatcatgc |
37834748 |
T |
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| Q |
318 |
attgctatgtcacaaagtttgattcttacaacaatcatctaaaaaagtcatcctcttttagtgacatggaaatgcatgattgagtgatagaagggaaacc |
417 |
Q |
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| T |
37834749 |
attgctatgtcactaagtttgattcttacaacaatcatctaaaaaagtcatcctcttttagtgacatggaaatgcatgattgagtgatagaagggaaacc |
37834848 |
T |
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| Q |
418 |
tgtaaccaatttattttacatcgacagtacatcaaaataaaatagaagaaatttacctttgagtggtagagaacagttagaacctacgagttgagtttta |
517 |
Q |
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| T |
37834849 |
tgtaaccaatttattttacatcgacagtacattaaaataaaatagaagaaatttacctttgagtggtagagaacagttagaacctacgagttgagtttta |
37834948 |
T |
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| Q |
518 |
atcttctgagaaacagggcattgcagctcaagaaaagagtagggatcagaatttgcttcgctattga |
584 |
Q |
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| T |
37834949 |
atcttctgagaaacagggcattgcagctcaagaaaagagtggagatcagaatttgcttcgctattga |
37835015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 37843336 - 37843531
Alignment:
| Q |
42 |
aagatatgttgccatgatgaataatagccaaggagttttgacggttcacatgccgatccaacattattaatgtgtctggtttcattagcttgactgagtg |
141 |
Q |
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| T |
37843336 |
aagatatcttgccatgatgaaaa---gccaagaacttttgagagttcacatgtcaatccaacattgttaatgtatttggtttcattagtttgactgagtg |
37843432 |
T |
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| Q |
142 |
ggatataatctacctgacgaaagacaggcaacctttcttgatcatctatcacaattccaattttacaattagtatgacatgttaggtaagatcttgcct |
240 |
Q |
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| T |
37843433 |
agatatcatcaacctgaggaatgacaggcaacctttcctgatcatctatcacaatttcaatttcacaattagtatggcatgtatggtaagatcttgcct |
37843531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 457 - 584
Target Start/End: Original strand, 37843793 - 37843920
Alignment:
| Q |
457 |
aaatagaagaaatttacctttgagtggtagagaacagttagaacctacgagttgagttttaatcttctgagaaacagggcattgcagctcaagaaaagag |
556 |
Q |
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| T |
37843793 |
aaattgaagaaatttacctttgagaggtagaggacagttagaataagggagttgagctttaatcttttgaacagcaggctgttgcagctcaagaaaagag |
37843892 |
T |
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| Q |
557 |
tagggatcagaatttgcttcgctattga |
584 |
Q |
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| T |
37843893 |
tagaaatccgaatttgcatggctattga |
37843920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 37843678 - 37843754
Alignment:
| Q |
360 |
aaaagtcatcctcttttagtgacatggaaatgcatgattgagtgatagaagggaaacctgtaaccaatttattttac |
436 |
Q |
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| T |
37843678 |
aaaagtcacccgcttttaatgagacggaaatacatgattgattggtagaagggaaacatgtatcgaatttattttac |
37843754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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