View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_high_9 (Length: 529)
Name: NF7580_high_9
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 6486274 - 6485756
Alignment:
| Q |
1 |
tggttcgcgaagagggtcacatttattctttagccgcttccggtgacttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatcttca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6486274 |
tggtccgcgaagagggtcacatttattctttagccgcatccggtgacttattatacaccggctcagacagcaagaacattcgtgtgtggaagaatcttca |
6486175 |
T |
|
| Q |
101 |
agaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtt |
200 |
Q |
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| T |
6486174 |
agaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtt |
6486075 |
T |
|
| Q |
201 |
tggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaaaccaagcaattatg |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6486074 |
tggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaaccaagcaattatg |
6485975 |
T |
|
| Q |
301 |
tcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctctactctgcttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6485974 |
tcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctctactctgcttc |
6485875 |
T |
|
| Q |
401 |
atgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaac |
500 |
Q |
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| T |
6485874 |
atgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaac |
6485775 |
T |
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| Q |
501 |
gacggaattgttttctctg |
519 |
Q |
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| T |
6485774 |
gacggaattgttttctctg |
6485756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 25703390 - 25703316
Alignment:
| Q |
5 |
tcgcgaagagggtcacatttattctttagccgcttccggtgacttattatacaccggttcagacagcaagaacat |
79 |
Q |
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||||||||| |||||||| || || ||||||| |||||||||| | |||||||||||| | || ||||| ||||| |
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| T |
25703390 |
tcgcgaagaaggtcacatctactccttagccgtttccggtgacatgttatacaccggtaccgatagcaaaaacat |
25703316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 6917703 - 6917655
Alignment:
| Q |
48 |
ttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatc |
96 |
Q |
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| T |
6917703 |
ttattatacaccggttctgatagtaaaaacattcgtgtttggaagaatc |
6917655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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