View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_low_11 (Length: 464)

Name: NF7580_low_11
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_low_11
NF7580_low_11
[»] chr1 (24 HSPs)
chr1 (18-456)||(67570-68008)
chr1 (348-414)||(43057234-43057300)
chr1 (351-414)||(20057892-20057955)
chr1 (351-414)||(20845834-20845897)
chr1 (302-416)||(16452057-16452171)
chr1 (302-416)||(16461210-16461324)
chr1 (351-414)||(20054253-20054316)
chr1 (351-414)||(20054709-20054772)
chr1 (351-414)||(20055165-20055228)
chr1 (351-414)||(20055621-20055684)
chr1 (351-414)||(20056077-20056140)
chr1 (351-414)||(20056533-20056596)
chr1 (351-414)||(20056980-20057043)
chr1 (351-414)||(20057436-20057499)
chr1 (298-383)||(16907175-16907260)
chr1 (167-218)||(45136782-45136833)
chr1 (302-384)||(2634864-2634946)
chr1 (351-407)||(52250123-52250179)
chr1 (351-414)||(38340816-38340879)
chr1 (351-414)||(43057696-43057759)
chr1 (422-456)||(15321089-15321123)
chr1 (354-407)||(10820509-10820562)
chr1 (415-456)||(12145008-12145049)
chr1 (416-456)||(49897912-49897952)
[»] chr4 (22 HSPs)
chr4 (302-414)||(27026414-27026526)
chr4 (348-414)||(3169116-3169182)
chr4 (302-415)||(33987189-33987302)
chr4 (351-414)||(50398705-50398768)
chr4 (351-414)||(1645916-1645979)
chr4 (351-414)||(12692166-12692229)
chr4 (302-397)||(17028801-17028896)
chr4 (329-414)||(8467944-8468029)
chr4 (351-414)||(4127605-4127668)
chr4 (351-414)||(4128057-4128120)
chr4 (351-414)||(39180716-39180779)
chr4 (419-457)||(22050897-22050935)
chr4 (352-414)||(23942954-23943016)
chr4 (301-414)||(27029188-27029301)
chr4 (348-415)||(23976383-23976450)
chr4 (353-415)||(29628836-29628898)
chr4 (302-388)||(50399111-50399197)
chr4 (351-404)||(23943405-23943458)
chr4 (415-456)||(25062360-25062401)
chr4 (353-414)||(33295347-33295408)
chr4 (354-414)||(1464057-1464117)
chr4 (351-399)||(31817565-31817613)
[»] chr6 (13 HSPs)
chr6 (308-414)||(1991461-1991567)
chr6 (302-415)||(2720688-2720801)
chr6 (351-414)||(6331085-6331148)
chr6 (351-414)||(20126355-20126418)
chr6 (351-414)||(20896861-20896924)
chr6 (351-414)||(2681389-2681452)
chr6 (351-414)||(3652889-3652952)
chr6 (351-414)||(20850231-20850294)
chr6 (347-412)||(15929111-15929176)
chr6 (351-404)||(23986490-23986543)
chr6 (351-414)||(11062196-11062259)
chr6 (348-414)||(21311881-21311947)
chr6 (351-412)||(3652398-3652459)
[»] chr3 (14 HSPs)
chr3 (351-415)||(39653073-39653137)
chr3 (363-414)||(2911005-2911056)
chr3 (302-414)||(16811291-16811403)
chr3 (351-414)||(25803177-25803240)
chr3 (351-414)||(28561656-28561719)
chr3 (351-414)||(39653530-39653593)
chr3 (164-235)||(54437595-54437665)
chr3 (302-404)||(16810845-16810947)
chr3 (351-414)||(11180206-11180269)
chr3 (367-414)||(25238860-25238907)
chr3 (351-416)||(13155375-13155439)
chr3 (351-412)||(50347658-50347719)
chr3 (415-456)||(54437678-54437719)
chr3 (351-415)||(14813858-14813922)
[»] chr5 (19 HSPs)
chr5 (302-417)||(20039598-20039713)
chr5 (351-415)||(34371521-34371585)
chr5 (351-414)||(2193726-2193789)
chr5 (351-414)||(15513186-15513249)
chr5 (351-414)||(18304341-18304404)
chr5 (415-454)||(22780339-22780378)
chr5 (351-414)||(34371978-34372041)
chr5 (415-455)||(2243310-2243350)
chr5 (164-235)||(22780391-22780462)
chr5 (415-456)||(7215461-7215502)
chr5 (366-415)||(42788833-42788882)
chr5 (351-415)||(5067063-5067127)
chr5 (351-415)||(17445628-17445692)
chr5 (351-414)||(34867700-34867763)
chr5 (351-414)||(39146849-39146912)
chr5 (419-457)||(973156-973194)
chr5 (304-414)||(21886272-21886382)
chr5 (415-457)||(40483722-40483764)
chr5 (415-456)||(41264414-41264455)
[»] chr2 (16 HSPs)
chr2 (302-415)||(29804591-29804704)
chr2 (353-414)||(33174868-33174929)
chr2 (351-406)||(27883099-27883154)
chr2 (351-414)||(33770920-33770983)
chr2 (351-414)||(41754199-41754262)
chr2 (351-415)||(25338170-25338234)
chr2 (351-417)||(25434229-25434295)
chr2 (166-235)||(2248983-2249052)
chr2 (176-215)||(4568981-4569020)
chr2 (351-414)||(8256436-8256499)
chr2 (379-414)||(20179098-20179133)
chr2 (415-449)||(16576289-16576323)
chr2 (351-396)||(18448091-18448136)
chr2 (351-407)||(1706959-1707015)
chr2 (351-415)||(15619807-15619871)
chr2 (351-415)||(15639649-15639713)
[»] chr8 (16 HSPs)
chr8 (351-407)||(27022511-27022567)
chr8 (351-414)||(10844793-10844856)
chr8 (351-414)||(22026289-22026352)
chr8 (351-414)||(22549168-22549231)
chr8 (351-414)||(27925809-27925872)
chr8 (302-415)||(8080466-8080579)
chr8 (351-414)||(28453249-28453312)
chr8 (351-414)||(32292307-32292370)
chr8 (351-413)||(25307676-25307738)
chr8 (351-415)||(12827427-12827491)
chr8 (353-417)||(41659280-41659343)
chr8 (351-414)||(22840702-22840765)
chr8 (415-456)||(7405551-7405592)
chr8 (419-456)||(29093581-29093618)
chr8 (415-456)||(32166628-32166669)
chr8 (166-235)||(39280912-39280981)
[»] scaffold0243 (1 HSPs)
scaffold0243 (351-414)||(1130-1193)
[»] chr7 (15 HSPs)
chr7 (351-414)||(6747771-6747834)
chr7 (351-414)||(34405764-34405827)
chr7 (354-415)||(2463551-2463612)
chr7 (351-414)||(2189054-2189117)
chr7 (351-414)||(10430673-10430736)
chr7 (176-213)||(8448081-8448118)
chr7 (367-414)||(2189510-2189557)
chr7 (351-414)||(2611825-2611888)
chr7 (363-406)||(35527305-35527348)
chr7 (351-398)||(36422178-36422225)
chr7 (352-414)||(679727-679789)
chr7 (255-301)||(6718926-6718971)
chr7 (415-453)||(8354388-8354426)
chr7 (428-456)||(757935-757963)
chr7 (160-188)||(32962613-32962641)
[»] scaffold0088 (1 HSPs)
scaffold0088 (351-414)||(23583-23646)
[»] scaffold0168 (1 HSPs)
scaffold0168 (353-415)||(2651-2713)
[»] scaffold0391 (1 HSPs)
scaffold0391 (351-408)||(14658-14715)
[»] scaffold0333 (1 HSPs)
scaffold0333 (351-415)||(4470-4534)
[»] scaffold1126 (1 HSPs)
scaffold1126 (351-410)||(1089-1148)
[»] scaffold0002 (1 HSPs)
scaffold0002 (351-416)||(151549-151613)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 67570 - 68008
Alignment:
Q  18 gaaatgaggtcttataaactaaattttgatcaatagttaagtaaagtatatggttaatgatagtttaagctaggatccaaattcggattattttaaatgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  67570 gaaatgaggtcttataaactaaattttgatcaatagttaagtaaagtatatggttaatgatagtttgagctaggatccaaattcagattattttaaatgg 67669  T
Q  118 tttgttattaggttttttctacgttgcccccttatgaattggtggaggtaatttacctctatcaaagaaaagactcattttcttcatctttattattaca 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  67670 tttgttattaggttttttctaggttgcccccttatgaattggtggaggtaatttacctctatcaaagaaaagactcattttcttcatctttattattaca 67769  T
Q  218 aagggttaccattttcattttaagaacgtattaaacttgtaacatcccagacgacttttcaagattgctgactaaccccacaaaatccctctcattccga 317  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  67770 aagggttaccattttcattttatgaacatattaaacttgtaacatcccagacgacttttcaagattgccaactaaccccacaaaatccctctcattccga 67869  T
Q  318 tttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaaa 417  Q
    | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  67870 tgtgatttgattttcctagaagctaccaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctcgggcattacaaaa 67969  T
Q  418 cttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  67970 cttcttcatatccttcattctacatgtgatcttcatctc 68008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 43057234 - 43057300
Alignment:
Q  348 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  43057234 agtcgctcattgtcatgccttgtgcaccggcaaccactccccgtcctcgtcagccttgggtgttaca 43057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20057892 - 20057955
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  20057892 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcaaccttgggtgttaca 20057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20845834 - 20845897
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  20845834 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttaca 20845897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 416
Target Start/End: Original strand, 16452057 - 16452171
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16452057 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16452156  T
Q  402 cttgggcgttacaaa 416  Q
    |||||| ||||||||    
T  16452157 cttgggtgttacaaa 16452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 416
Target Start/End: Original strand, 16461210 - 16461324
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16461210 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16461309  T
Q  402 cttgggcgttacaaa 416  Q
    |||||| ||||||||    
T  16461310 cttgggtgttacaaa 16461324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20054253 - 20054316
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20054253 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20054709 - 20054772
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20054709 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20055165 - 20055228
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20055165 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20055621 - 20055684
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20055621 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20056077 - 20056140
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056077 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20056533 - 20056596
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056533 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20056980 - 20057043
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056980 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20057436 - 20057499
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20057436 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 16907260 - 16907175
Alignment:
Q  298 caaaatccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgacca 383  Q
    ||||||||||||||||  ||| ||||||| |||||||||||||| | |  || |||| ||||||||||||||| ||| ||||||||    
T  16907260 caaaatccctctcattttgatatgatttggtttgcctagaagctgccaggagccgctgattgtcatgtcttgtgcactggcgacca 16907175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 45136833 - 45136782
Alignment:
Q  167 aatttacctctatcaaagaaaagactcattttcttcatctttattattacaa 218  Q
    |||||||| |||||||||||||  ||||||||||||||||||||| ||||||    
T  45136833 aatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaa 45136782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 2634946 - 2634864
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccac 384  Q
    ||||||||||||||||| ||||| |||||||||||||| | | |  || | | |||||||||| ||||| |||||||||||||    
T  2634946 atccctctcattccgatgtgattcgatttgcctagaagttgctaggagccacacattgtcatgccttgtgcaccggcgaccac 2634864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 52250179 - 52250123
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 407  Q
    ||||||||||| || ||||| ||||||||||| ||||||| |||||||| |||||||    
T  52250179 cgctcattgtcgtgccttgtgcaccggcgaccgctccccgccctcgtcagccttggg 52250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 38340879 - 38340816
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||| |||||||||||  |||||||| ||||||| ||||||    
T  38340879 cgctcattgtcgtgccttgtgcaccggtgaccactccccaccctcgtcagccttgggtgttaca 38340816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 43057696 - 43057759
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||| |||| ||||| |||||||||||| |||||| |||| ||| ||||||| ||||||    
T  43057696 cgctcattggcatgccttgtgcaccggcgaccattccccgccctcttcagccttgggtgttaca 43057759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 15321089 - 15321123
Alignment:
Q  422 ttcatatccttcattcaacatgtgatcttcatctc 456  Q
    ||||||||||||||||||||||| |||||||||||    
T  15321089 ttcatatccttcattcaacatgtaatcttcatctc 15321123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 10820562 - 10820509
Alignment:
Q  354 tcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 407  Q
    |||||||||||  |||| |||||||||||||| ||| ||||||||| |||||||    
T  10820562 tcattgtcatgctttgtgcaccggcgaccacttcccatcctcgtcagccttggg 10820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 12145008 - 12145049
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||| || ||||||||||||||||| ||||||||    
T  12145008 aaacttcttcatctcattcattcaacatgtgattttcatctc 12145049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 49897912 - 49897952
Alignment:
Q  416 aacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  49897912 aacttcttcttctccttcattcaacatgtgatctccatctc 49897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 27026526 - 27026414
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||| ||| ||||| | |||||||| ||||||| |  ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||| |    
T  27026526 atccctctcattctgatgtgattcggtttgcctaaaagctaccaggagtcgctcattgtcatgccttgtgcaccgacgaccactccccgttctcgtcagc 27026427  T
Q  402 cttgggcgttaca 414  Q
    || ||||||||||    
T  27026426 ctcgggcgttaca 27026414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 3169182 - 3169116
Alignment:
Q  348 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  3169182 agtcgctcattgtcgtgtcttgtgcaccggtgaccactccccgtcctcgtcaaccttgggtgttaca 3169116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 33987189 - 33987302
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| |||||   |||||||||||||| | || ||||||||||||||||| ||||| ||| | |||||||||| | |||||| || |    
T  33987189 atccctctcattccgatgtgattcagtttgcctagaagctgccaagagtcgctcattgtcatgccttgtgcactgacgaccactcctcatcctcgccagc 33987288  T
Q  402 cttgggcgttacaa 415  Q
    || || ||||||||    
T  33987289 ctcggacgttacaa 33987302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 50398705 - 50398768
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  50398705 cgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 50398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 1645916 - 1645979
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  1645916 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1645979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 12692166 - 12692229
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  12692166 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 12692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 17028896 - 17028801
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgt 397  Q
    ||||||||||||||||| |||||   |||||||||||||| |||  || | |||||||||||| ||||| ||||| |||||||| | |||||||||    
T  17028896 atccctctcattccgatgtgattcagtttgcctagaagctgcaaggagcctctcattgtcatgccttgtgcaccgccgaccactacacgtcctcgt 17028801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 8467944 - 8468029
Alignment:
Q  329 ttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||||| | |  || ||| || ||||||| ||||| ||| ||||||||||||||| |||||||||||| ||||||||||    
T  8467944 ttgcctagaagctgccaggagccgcgcaatgtcatgccttgtgcactggcgaccactccccgccctcgtcaacctcgggcgttaca 8468029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 4127605 - 4127668
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  4127605 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 4127668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 4128057 - 4128120
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  4128057 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 4128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 39180716 - 39180779
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||| |||  |||||||||    
T  39180716 cgctcattgccatgtcttgtgcaccggtgatcactccccgtcctcgtcagcctcaggcgttaca 39180779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 22050897 - 22050935
Alignment:
Q  419 ttcttcatatccttcattcaacatgtgatcttcatctca 457  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22050897 ttcttcatctccttcattcaacatgtgatcttcatctca 22050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 414
Target Start/End: Original strand, 23942954 - 23943016
Alignment:
Q  352 gctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||| || ||||| ||||||||||||||||||| |||||||| |||| || ||||||    
T  23942954 gctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttaggtgttaca 23943016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 27029301 - 27029188
Alignment:
Q  301 aatccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaa 400  Q
    |||||||||||||| ||| | ||| | ||| |||| ||||||| | ||| |||||||||||||   |||| ||  ||||||||||||||| ||||||||     
T  27029301 aatccctctcattctgatgtaattcggttttcctataagctaccagaagccgctcattgtcatacattgtgcattggcgaccactccccgccctcgtcag 27029202  T
Q  401 ccttgggcgttaca 414  Q
    ||| ||| ||||||    
T  27029201 cctcgggtgttaca 27029188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 23976383 - 23976450
Alignment:
Q  348 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    |||||||||||| ||||| |||| ||||||| | |||||||||||||| | | || ||||||||||||    
T  23976383 agtcgctcattgccatgtattgtgcaccggcaatcactccccgtcctcataagccatgggcgttacaa 23976450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 29628836 - 29628898
Alignment:
Q  353 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||| | || ||||| |||||||||||||||||||||||||||  ||||||  |||||||    
T  29628836 ctcattggcgtgccttgtgcaccggcgaccactccccgtcctcgtccgccttggatgttacaa 29628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 50399111 - 50399197
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccc 388  Q
    ||||||||||||||||| ||||| |  ||| ||||||| |   | ||| |||||||||||||| ||||| ||| |||||||||||||    
T  50399111 atccctctcattccgatgtgattcggcttgtctagaagttgtcagaagccgctcattgtcatgccttgtgcactggcgaccactccc 50399197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 23943405 - 23943458
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctt 404  Q
    ||||||||||| || ||  ||||||||||||||||| |||||||||||| ||||    
T  23943405 cgctcattgtcgtgcctcatacaccggcgaccactctccgtcctcgtcatcctt 23943458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 25062360 - 25062401
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||| | ||||||| |||||||||||||||||||    
T  25062360 aaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 33295347 - 33295408
Alignment:
Q  353 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||||||| || |||| |||||| | |||||| |||| ||| ||||||||||    
T  33295347 ctcattgtcatgtcttgtgcatcggcaaccactgcacgtccttgtcatcctcgggcgttaca 33295408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 1464117 - 1464057
Alignment:
Q  354 tcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||||||| | ||||||||||||||| ||||| |||| |  |||||| ||||||    
T  1464117 tcattgtcatgtcttatgcaccggcgaccactctccgtcttcgttagtcttgggtgttaca 1464057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 31817565 - 31817613
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtca 399  Q
    |||||||||||||| ||||| ||| || |||||||||||| ||||||||    
T  31817565 cgctcattgtcatgccttgtgcactggtgaccactccccggcctcgtca 31817613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 1991567 - 1991461
Alignment:
Q  308 ctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 407  Q
    ||||||||||| ||||||| |||||||||||||||| |  |||||| ||||||||||  |||| || ||||||||||||| |||||| |||| ||| | |    
T  1991567 ctcattccgatgtgatttggtttgcctagaagctaccaggagtcgcacattgtcatgcattgtgcatcggcgaccactcctcgtccttgtcagcctcgag 1991468  T
Q  408 cgttaca 414  Q
    |||||||    
T  1991467 cgttaca 1991461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 2720688 - 2720801
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||| | ||||||| || | |||||||||     ||||||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  2720688 atccctctcattccggtatgatttggttcgtctagaagctgtccgaagtcgctcattgtcgtgacttgtgcaccggcgaccactccccgccctcgtcagc 2720787  T
Q  402 cttgggcgttacaa 415  Q
    ||| || |||||||    
T  2720788 cttaggtgttacaa 2720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 6331085 - 6331148
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| ||||||||||||||||||  |||||||| ||||||| ||||||    
T  6331085 cgctcattgtcatgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 6331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20126355 - 20126418
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||  ||||||| ||||||    
T  20126355 cgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcggccttgggtgttaca 20126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20896861 - 20896924
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| || |||||||||||| |||||||||||| ||||||| ||||||    
T  20896861 cgctcattgtcatgccttgtgcaacggcgaccactctccgtcctcgtcagccttgggtgttaca 20896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 2681389 - 2681452
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || |||||  |||||||||||||||||| |||||||| ||||||| ||||||    
T  2681389 cgctcattgtcgtgccttgtgtaccggcgaccactccccgccctcgtcagccttgggtgttaca 2681452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 3652952 - 3652889
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  3652952 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 3652889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 20850294 - 20850231
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  20850294 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 20850231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 15929176 - 15929111
Alignment:
Q  347 aagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 412  Q
    |||||||||||||||||| |||||||| | |||||||||||||  |||| ||| ||||||| ||||    
T  15929176 aagtcgctcattgtcatgccttgtacatcagcgaccactccccaccctcatcagccttgggtgtta 15929111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 23986490 - 23986543
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctt 404  Q
    |||||||||||||| ||||| ||||| ||||||||||||| |||||||| ||||    
T  23986490 cgctcattgtcatgccttgtgcaccgacgaccactccccgccctcgtcagcctt 23986543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 11062259 - 11062196
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||| |||||||||||| | |||| | ||||||||||||||    
T  11062259 cgctcattgtcgtgccttgtgcaccggtgaccactccccgccttcgtaagccttgggcgttaca 11062196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 21311947 - 21311881
Alignment:
Q  348 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||  || ||||| ||| |||||||||| |||| |||||||| ||||||| ||||||    
T  21311947 agtcgctcattgttgtgccttgtgcactggcgaccacttcccgccctcgtcagccttgggtgttaca 21311881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 3652459 - 3652398
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 412  Q
    ||||||||||| || ||||| ||||| ||||||||||||| |||| ||| ||||||| ||||    
T  3652459 cgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcatcagccttgggtgtta 3652398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 39653137 - 39653073
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  39653137 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttacaa 39653073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 2911056 - 2911005
Alignment:
Q  363 tgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||    
T  2911056 tgtcttgtgcaccggcgaccactccccgtcctcgtcaatcttgggtgttaca 2911005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 16811403 - 16811291
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||  |||||||| |    
T  16811403 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagc 16811304  T
Q  402 cttgggcgttaca 414  Q
    |||||| ||||||    
T  16811303 cttgggtgttaca 16811291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 25803177 - 25803240
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||| ||| ||||| |||| |||||||||||||||||| |||| ||||||| ||||||    
T  25803177 cgctcattgttatgccttgtgcaccagcgaccactccccgtcctagtcagccttgggtgttaca 25803240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 28561719 - 28561656
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  28561719 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 28561656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 39653593 - 39653530
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||| ||||||    
T  39653593 cgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 39653530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 54437595 - 54437665
Alignment:
Q  164 ggtaatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 235  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||    |||||||||||||    
T  54437595 ggtaatttacc-ctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcat 54437665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 16810947 - 16810845
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16810947 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16810848  T
Q  402 ctt 404  Q
    |||    
T  16810847 ctt 16810845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 11180206 - 11180269
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| |  ||||| ||||||||||||||||||| |||| ||| ||||||| ||||||    
T  11180206 cgctcattgtcgtaccttgtgcaccggcgaccactccccgccctcttcagccttgggtgttaca 11180269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 25238860 - 25238907
Alignment:
Q  367 ttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  25238860 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 25238907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 13155375 - 13155439
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaa 416  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| | ||||| ||||||||    
T  13155375 cgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgttacaaa 13155439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 50347719 - 50347658
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 412  Q
    ||||||||||| |  ||||| ||||||||| ||||||||| |||||||| ||||||| ||||    
T  50347719 cgctcattgtcgttccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgtta 50347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 54437678 - 54437719
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||||||||||||| ||||||| | |||||||||    
T  54437678 aaacttcttcatatccttcatttaacatgtaaacttcatctc 54437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 14813922 - 14813858
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    |||| |||||| || ||||| |||||||||||||||| || |||||||| ||||| | |||||||    
T  14813922 cgctaattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgtgtgttacaa 14813858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 20039598 - 20039713
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| | |||| |||||||||      ||  ||||||||||||| ||||| |||||||||||| |||||| |||||||| |    
T  20039598 atccctctcattccgatgtgattcggtttgtctagaagctgtcgggagctgctcattgtcatgccttgtgcaccggcgaccattccccgccctcgtcagc 20039697  T
Q  402 cttgggcgttacaaaa 417  Q
    |||||| |||||||||    
T  20039698 cttgggtgttacaaaa 20039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 34371585 - 34371521
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  34371585 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 34371521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 2193789 - 2193726
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  2193789 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2193726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 15513186 - 15513249
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||| || || ||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15513186 cgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttaca 15513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 18304404 - 18304341
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||  |||||| ||||||    
T  18304404 cgctcattgtcgtgtcttgtgcaccggcgatcactccccgtcctcgtcagtcttgggtgttaca 18304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 454
Target Start/End: Complemental strand, 22780378 - 22780339
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatc 454  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22780378 aaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 34372041 - 34371978
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  34372041 cgctcattgtcctgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 2243350 - 2243310
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatct 455  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2243350 aaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 22780462 - 22780391
Alignment:
Q  164 ggtaatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 235  Q
    |||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| | || |||||||||||    
T  22780462 ggtaatatacctcaatcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcat 22780391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 7215502 - 7215461
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  7215502 aaactttttcatattcttcattcaacatgtgatcttcatctc 7215461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 42788833 - 42788882
Alignment:
Q  366 cttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  42788833 cttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 42788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 5067063 - 5067127
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||  |||||||  |||||||||||||||||| ||||||||| || |||| |||||||    
T  5067063 cgctcattgttgtgtcttgcgcaccggcgaccactccccatcctcgtcagccatgggtgttacaa 5067127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 17445628 - 17445692
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||| |||| ||||| ||||| ||||||||||||||||| || | ||||||| |||||||    
T  17445628 cgctcattgccatgccttgtgcaccgtcgaccactccccgtccttgttagccttgggtgttacaa 17445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 34867763 - 34867700
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||| ||||| || |||||||| ||||||| ||||||    
T  34867763 cgctcattgtcgtgccttgtgcaccggcgactactcctcgccctcgtcagccttgggtgttaca 34867700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 39146912 - 39146849
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||| ||||||||  |||||||| ||||||| ||||||    
T  39146912 cgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 39146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 973156 - 973194
Alignment:
Q  419 ttcttcatatccttcattcaacatgtgatcttcatctca 457  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  973156 ttcttcatctcctttattcaacatgtgatcttcatctca 973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 21886272 - 21886382
Alignment:
Q  304 ccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacct 403  Q
    ||||||||||||| | ||||| | ||   ||||||||||| |  || ||||||||||| || ||||| ||||||||||||||| ||| |||| ||| |||    
T  21886272 ccctctcattccggtgtgattcggttcctctagaagctaccaggagccgctcattgtcgtgccttgtgcaccggcgaccactctccgccctcatcagcct 21886371  T
Q  404 tgggcgttaca 414  Q
    | || ||||||    
T  21886372 tcggtgttaca 21886382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 40483722 - 40483764
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctca 457  Q
    |||||||||||| ||  ||||||||||||||||||||||||||    
T  40483722 aaacttcttcatctcactcattcaacatgtgatcttcatctca 40483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 41264414 - 41264455
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||| |||||||  ||||||||||||||||||||||||||    
T  41264414 aaactttttcatattgttcattcaacatgtgatcttcatctc 41264455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 415
Target Start/End: Complemental strand, 29804704 - 29804591
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || |||||||| || || ||||| |||||||||||||||||||||||||||| |    
T  29804704 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagc 29804605  T
Q  402 cttgggcgttacaa 415  Q
    |||||| |||||||    
T  29804604 cttgggtgttacaa 29804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 33174929 - 33174868
Alignment:
Q  353 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  33174929 ctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 27883099 - 27883154
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgg 406  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||    
T  27883099 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgg 27883154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 33770983 - 33770920
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  33770983 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 41754262 - 41754199
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  41754262 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgggtgttaca 41754199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 25338170 - 25338234
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| |||||||    
T  25338170 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttacaa 25338234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 25434229 - 25434295
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaaa 417  Q
    ||||||||||| || ||||| |||||||| |||||||||| |||||||| ||||| | |||||||||    
T  25434229 cgctcattgtcgtgccttgtgcaccggcggccactccccgccctcgtcagccttgtgtgttacaaaa 25434295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 2249052 - 2248983
Alignment:
Q  166 taatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 235  Q
    |||||||||||||||||||||||  |  |||||||||||||||||| ||| ||   ||||||||||||||    
T  2249052 taatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcat 2248983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 4568981 - 4569020
Alignment:
Q  176 ctatcaaagaaaagactcattttcttcatctttattatta 215  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  4568981 ctatcaaagaaaaaactcattttcttcatctctattatta 4569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 8256499 - 8256436
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||| |||||||  |||||||| ||||||| ||||||    
T  8256499 cgctcattgtcgtgccttgtgcaccggcgactactccccaccctcgtcagccttgggtgttaca 8256436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 20179133 - 20179098
Alignment:
Q  379 gaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||||||||||||||||||||| ||||||    
T  20179133 gaccactccccgtcctcgtcaaccttgggtgttaca 20179098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 16576289 - 16576323
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatct 449  Q
    |||||||||||| ||||||||||||||||||||||    
T  16576289 aaacttcttcatctccttcattcaacatgtgatct 16576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 18448091 - 18448136
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcg 396  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||    
T  18448091 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcg 18448136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 1707015 - 1706959
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 407  Q
    ||||||||||| || ||||| ||||| ||||||||||||| |||||| | |||||||    
T  1707015 cgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcgttagccttggg 1706959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 15619871 - 15619807
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| |||||||||||||||||||  ||| |||  |||||| |||||||    
T  15619871 cgctcattgtcgtgccttgtgcaccggcgaccactccccgctctcatcagtcttgggtgttacaa 15619807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 15639713 - 15639649
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| |||||||||||||||||||  ||| |||  |||||| |||||||    
T  15639713 cgctcattgtcgtgccttgtgcaccggcgaccactccccgctctcatcagtcttgggtgttacaa 15639649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 27022511 - 27022567
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 407  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||    
T  27022511 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttggg 27022567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 10844856 - 10844793
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  10844856 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 10844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 22026352 - 22026289
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  22026352 cgctcattgtcatgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 22026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 22549168 - 22549231
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  22549168 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 22549231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 27925872 - 27925809
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||||| ||||||    
T  27925872 cgctcattgtcgtgccttgtgcaccagcgaccactccccgtcctcgtcagccttgggtgttaca 27925809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 8080466 - 8080579
Alignment:
Q  302 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 401  Q
    ||||||||||||||||| |||||   ||   |||||||||   || || ||||||||||| || ||||| |||||||||||||||| || |||||||| |    
T  8080466 atccctctcattccgatgtgattcagttcctctagaagctgttaagagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagc 8080565  T
Q  402 cttgggcgttacaa 415  Q
    |||||| |||||||    
T  8080566 cttgggtgttacaa 8080579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 28453312 - 28453249
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||| ||||||||||| |||||||| ||||||| ||||||    
T  28453312 cgctcattgtcgtgccttgtgcaccggcaaccactccccgccctcgtcagccttgggtgttaca 28453249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 32292370 - 32292307
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| ||||||| ||||||    
T  32292370 cgctcattgtcgtgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttaca 32292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 25307738 - 25307676
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttac 413  Q
    ||||||||||| |||||||||||||| | ||||||||| | |||||||| ||||||| |||||    
T  25307738 cgctcattgtcgtgtcttgtacaccgactaccactcccggccctcgtcagccttgggtgttac 25307676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 12827427 - 12827491
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| ||||||||| ||||||||  |||||||| ||||||| |||||||    
T  12827427 cgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttacaa 12827491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 41659280 - 41659343
Alignment:
Q  353 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaaa 417  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||| |||| || |||||||||    
T  41659280 ctcattgtcgtg-cttgtgcaccggcgaccactccccgccctcgtcagccttaggtgttacaaaa 41659343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 22840702 - 22840765
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||| || |||||| | ||||||||||||||||||| ||| |||| ||||||| ||||||    
T  22840702 cgctcattatcgtgtcttatgcaccggcgaccactccccgcccttgtcagccttgggtgttaca 22840765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 7405592 - 7405551
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||| ||||||| |||| ||||||||||||||||||||||||    
T  7405592 aaacgtcttcatctcctacattcaacatgtgatcttcatctc 7405551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 29093581 - 29093618
Alignment:
Q  419 ttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctc 29093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 32166669 - 32166628
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  32166669 aaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 39280912 - 39280981
Alignment:
Q  166 taatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 235  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||| ||| ||   ||||||||||||||    
T  39280912 taatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 1193 - 1130
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  1193 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 6747771 - 6747834
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||||||| ||||| ||||||||||||||||| | |||||||| ||||||| ||||||    
T  6747771 cgctcattgtcatgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgttaca 6747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 34405764 - 34405827
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  34405764 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34405827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 2463612 - 2463551
Alignment:
Q  354 tcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  2463612 tcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 2463551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 2189117 - 2189054
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||| | ||||||    
T  2189117 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgagtgttaca 2189054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 10430736 - 10430673
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||| ||| ||||||| ||||||    
T  10430736 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcatcagccttgggtgttaca 10430673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 8448118 - 8448081
Alignment:
Q  176 ctatcaaagaaaagactcattttcttcatctttattat 213  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8448118 ctatcaaagaaaaaactcattttcttcatctttattat 8448081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 2189557 - 2189510
Alignment:
Q  367 ttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  2189557 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 2611825 - 2611888
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| ||||||||||||||||||  |||||||| |||| || ||||||    
T  2611825 cgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagcctttggtgttaca 2611888  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 35527305 - 35527348
Alignment:
Q  363 tgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgg 406  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||    
T  35527305 tgtcttgtgcaccgacgaccactccccgtcctcgtcagccttgg 35527348  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 36422225 - 36422178
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtc 398  Q
    ||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  36422225 cgctcattgtcgtgccttgtgcaccggcgaccactccccatcctcgtc 36422178  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 679789 - 679727
Alignment:
Q  352 gctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    |||||||||| ||  |||| || ||||||||||||||||||||||||| |||| || ||||||    
T  679789 gctcattgtcgtgctttgtgcatcggcgaccactccccgtcctcgtcagccttaggtgttaca 679727  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 6718926 - 6718971
Alignment:
Q  255 tgtaacatcccagacgacttttcaagattgctgactaaccccacaaa 301  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||    
T  6718926 tgtaacatcccagacgactttt-aggattgctgactgaccccacaaa 6718971  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 453
Target Start/End: Complemental strand, 8354426 - 8354388
Alignment:
Q  415 aaacttcttcatatccttcattcaacatgtgatcttcat 453  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  8354426 aaacttctacatatccttcattcaacatgtgatattcat 8354388  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 428 - 456
Target Start/End: Complemental strand, 757963 - 757935
Alignment:
Q  428 tccttcattcaacatgtgatcttcatctc 456  Q
    |||||||||||||||||||||||||||||    
T  757963 tccttcattcaacatgtgatcttcatctc 757935  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 32962641 - 32962613
Alignment:
Q  160 tggaggtaatttacctctatcaaagaaaa 188  Q
    |||||||||||||||||||||||||||||    
T  32962641 tggaggtaatttacctctatcaaagaaaa 32962613  T

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Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 23646 - 23583
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 414  Q
    ||||||||||| || ||||| |||||||||||| |||||| |||||||| ||||||| ||||||    
T  23646 cgctcattgtcgtgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgttaca 23583  T

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Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 2713 - 2651
Alignment:
Q  353 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||| || ||||| | ||||||||||||||||| |||||||| ||||||| |||||||    
T  2713 ctcattgtcgtgccttgtgctccggcgaccactccccgccctcgtcagccttgggtgttacaa 2651  T

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Target: scaffold0391 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 14715 - 14658
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggc 408  Q
    |||||||||||||| ||| | ||||||||||||||| |||||||||||| ||| ||||    
T  14715 cgctcattgtcatgccttttgcaccggcgaccactctccgtcctcgtcagcctcgggc 14658  T

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Target: scaffold0333 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 4534 - 4470
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 415  Q
    ||||||||||| || ||||| |||||||| ||||||| || |||||||| ||||||| |||||||    
T  4534 cgctcattgtcgtgccttgtgcaccggcggccactcctcgccctcgtcagccttgggtgttacaa 4470  T

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Target: scaffold1126 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 1089 - 1148
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgt 410  Q
    |||||||||||||||||||| ||||  ||| |||||||| |||| |||||||| ||||||    
T  1089 cgctcattgtcatgtcttgtgcaccaacgatcactccccatccttgtcaacctcgggcgt 1148  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 151613 - 151549
Alignment:
Q  351 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaa 416  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| | ||||| ||||||||    
T  151613 cgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgttacaaa 151549  T

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