View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_14 (Length: 452)
Name: NF7580_low_14
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 13946862 - 13946580
Alignment:
| Q |
10 |
aagaatatcaaagacaaatattatagttgatggttatggagtatggccaagcggatttggaatctggtataagcctggtggaaacacaaatggaggcggc |
109 |
Q |
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| T |
13946862 |
aagaaaatcaaagacaaatattatagctgatggttatggagtatggccaagcggattcggaatctggtataagcctggtggaaacacaaatggaggcggc |
13946763 |
T |
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| Q |
110 |
agcggaaacatcataaactttcccggtagtggaaaacggggcggtggtgcaaatataaatagggaacgcaagtcaagcctcgagaaagtatgcatagaaa |
209 |
Q |
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| T |
13946762 |
ggcggaaacatcataaactttcccggtagtggaaaacggggcggtggtgcaaatataaatagggaacgcaagtcaagcctcgagaaagtatgcatagaaa |
13946663 |
T |
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| Q |
210 |
actagtcgcgtatacacgtgtgatgtatcatgttgacacaattctgaatgtcgtatgaagtatagactgggtttgaactctat |
292 |
Q |
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| T |
13946662 |
actagtcgcatatacacgtgtgatgtatcatgttgacacaattctgaatgttgtatgaagcatagactgagtttgaactctat |
13946580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 299 - 436
Target Start/End: Complemental strand, 13946196 - 13946059
Alignment:
| Q |
299 |
tatcgtgaaatttagcgaatttatttcgctataaacgacattttccatacaattatttggggaactttcaatttgacactgcgacgttctcttgatatta |
398 |
Q |
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| T |
13946196 |
tatcgtgaaatttagcaaatttatttcgctataaacgacattttccatacaattatttggggaactttcaatttgacattgcgacattctcttgatatta |
13946097 |
T |
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| Q |
399 |
atgtatctcgattgttgtattttttgtcgttaactcat |
436 |
Q |
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| T |
13946096 |
atgtatctcgattgttatattttttgtcgttagctcat |
13946059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 55048977 - 55048934
Alignment:
| Q |
301 |
tcgtgaaatttagcgaattta-tttcgctataaacgacattttc |
343 |
Q |
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| T |
55048977 |
tcgtgaaatttagcgaatttagtttcgctataaacaacattttc |
55048934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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