View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7580_low_19 (Length: 421)
Name: NF7580_low_19
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 34186817 - 34186423
Alignment:
| Q |
20 |
ccatggaatccaattcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgc |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186817 |
ccatggaatccaaatcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgc |
34186718 |
T |
|
| Q |
120 |
catttgttcaccatacattctcatcttatttgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186717 |
catttgttcaccatacattctcatcttatttgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaa |
34186618 |
T |
|
| Q |
220 |
tcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186617 |
tcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattca |
34186518 |
T |
|
| Q |
320 |
gaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186517 |
gaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctca |
34186423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 11847771 - 11847703
Alignment:
| Q |
322 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
390 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||| || |||||||| |||||||| ||| ||| |||| |
|
|
| T |
11847771 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
11847703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 413
Target Start/End: Complemental strand, 518698 - 518305
Alignment:
| Q |
21 |
catggaatccaattcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcga--agaatcttttcgataacagtaagatccg |
118 |
Q |
| |
|
||||||||| | ||||| |||| |||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
518698 |
catggaatctagatcatgagattattcaatagaacatactacataatcgtacctggaggttattgagcgagaagaatcttttcgataacagtaagattcg |
518599 |
T |
|
| Q |
119 |
ccatttgttcaccatacattctcatcttatttgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttccca |
218 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||| ||||||||| || |||||||| |||||| ||| ||||||||| | |||||| ||||| | ||| |
|
|
| T |
518598 |
acatttgttcaccatgcattcttatcttgtttacaattgtgacagttcgagcaaaatagtcgataattgattctccattcttcatctgtaaaatctacca |
518499 |
T |
|
| Q |
219 |
atcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattc |
318 |
Q |
| |
|
|| |||| | ||||||||||||||||| |||| |||||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || |
|
|
| T |
518498 |
gtcacgtcacagggcctgaagctgtgctcgcttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgtttttt |
518401 |
T |
|
| Q |
319 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
413 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
|
|
| T |
518400 |
aaaattgtttcaagcacaactcgatcaattgcttgaaagaggtgattttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
518305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 413
Target Start/End: Original strand, 366964 - 367356
Alignment:
| Q |
21 |
catggaatccaattcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgcc |
120 |
Q |
| |
|
||||||||| || ||||| |||| |||||||||||| ||||||||||||||| | | ||| |||||||||||||||||||||| ||| ||||||| || | |
|
|
| T |
366964 |
catggaatctaaatcatgagattattcaatagaacacactacataatcgtacatggaggttattgagcgaagaatcttttcgacaacggtaagattcgac |
367063 |
T |
|
| Q |
121 |
atttgttcaccatacattc-tcatcttatttgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaa |
219 |
Q |
| |
|
||||| |||| |||||||| | ||||| ||| |||||||||| || |||||||| ||||| |||| ||||||||| | |||||| ||||| | ||| |
|
|
| T |
367064 |
atttggtcactatacattcttaatcttgtttacaattgtgagagttcgagcaaaatagtcattaattgattctccattcttcatctgtaaaatctaccag |
367163 |
T |
|
| Q |
220 |
tcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattca |
319 |
Q |
| |
|
|| |||| | ||||||||| || |||| |||| |||||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || | |
|
|
| T |
367164 |
tcacgtcacagggcctgaagttgagctcgcttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgtttttta |
367261 |
T |
|
| Q |
320 |
gaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
413 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| | | |||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
|
|
| T |
367262 |
aaattatttcaagcacaactcgatcaattgcttgaaagaggtgactttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
367356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 14864521 - 14864448
Alignment:
| Q |
319 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaa |
392 |
Q |
| |
|
||||| ||||| || ||| ||||||||||||||||| | | |||||| |||||||| | ||||||||||||||| |
|
|
| T |
14864521 |
agaatggtttcgagaacaactcgatcaattgcttgatacaaataattctttgcctttagatccttcagcttcaa |
14864448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 26545396 - 26545341
Alignment:
| Q |
319 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt |
374 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
26545396 |
agaattgtttcaagcacatcacgagaaattgcttgaaagaggtaattttttgcctt |
26545341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 15592637 - 15592569
Alignment:
| Q |
322 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
390 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||| || |||||||| |||||||| ||| ||| |||| |
|
|
| T |
15592637 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
15592569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University